Archaea are prominent members of the prokaryotic communities colonizing common forest mushrooms

Fungus-associated bacteriome in charge of their host behavior

(2017) Kristin Schulz-Bohm et al.   FUNGAL GENETICS AND BIOLOGY

Bacterial Communities in Boreal Forest Mushrooms Are Shaped Both by Soil Parameters and Host Identity

(2017) Mari Pent et al.   Frontiers in Microbiology

Ericoid Roots and Mycospheres Govern Plant-Specific Bacterial Communities in Boreal Forest Humus

(2016) Sari Timonen et al.   MICROBIAL ECOLOGY

Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone

(2016) Cristina N. Butterfield et al.   PeerJ

Metagenome sequence ofElaphomyces granulatusfrom sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and aProteobacteria-rich microbiome

(2015) C. Alisha Quandt et al.   ENVIRONMENTAL MICROBIOLOGY

Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers

(2015) Sarah J Spencer et al.   ISME Journal

Secondary Metabolites Control the Associated Bacterial Communities of Saprophytic Basidiomycotina Fungi

(2015) Maira Peres de Carvalho et al.   MICROBES AND ENVIRONMENTS

Bacterial complexes of the fruiting bodies and hyphosphere of certain basidiomycetes

(2014) Yu. A. Zagriadskaia et al.   BIOLOGY BULLETIN

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development

(2014) Steven F. Stoddard et al.   NUCLEIC ACIDS RESEARCH

Genomic and Metabolic Diversity of Marine Group I Thaumarchaeota in the Mesopelagic of Two Subtropical Gyres

(2014) Brandon K. Swan et al.   PLoS One

Meta-Analysis of Quantification Methods Shows that Archaea and Bacteria Have Similar Abundances in the Subseafloor

(2013) Karen G. Lloyd et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Black truffle-associated bacterial communities during the development and maturation ofTuber melanosporumascocarps and putative functional roles

(2013) Sanjay Antony-Babu et al.   ENVIRONMENTAL MICROBIOLOGY

Aspects of nitrogen-fixingActinobacteria, in particular free-living and symbioticFrankia

(2013) Anita Sellstedt et al.   FEMS MICROBIOLOGY LETTERS

Actinobacteria may influence white truffle (Tuber magnatum Pico) nutrition, ascocarp degradation and interactions with other soil fungi

(2013) Aleksandar Pavić et al.   Fungal Ecology

Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses

(2013) Jun Meng et al.   ISME Journal

Predominant archaea in marine sediments degrade detrital proteins

(2013) Karen G. Lloyd et al.   NATURE

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

“Methanoplasmatales,” Thermoplasmatales-Related Archaea in Termite Guts and Other Environments, Are the Seventh Order of Methanogens

(2012) Kristina Paul et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of Cellulose-Responsive Bacterial and Fungal Communities in Geographically and Edaphically Different Soils by Using Stable Isotope Probing

(2012) Stephanie A. Eichorst et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi

(2012) F. E. Loffler et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments

(2012) Kyoko Kubo et al.   ISME Journal

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Soil fungi influence the distribution of microbial functional groups that mediate forest greenhouse gas emissions

(2012) David J. Burke et al.   SOIL BIOLOGY & BIOCHEMISTRY

Targeted metabolites analysis in wild Boletus species

(2011) Sandrina A. Heleno et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

Anaerobic Eury- and Crenarchaeota inhabit ectomycorrhizas of boreal forest Scots pine

(2010) Malin Bomberg et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

New evidence for nitrogen fixation within the Italian white truffle Tuber magnatum

(2010) Elena Barbieri et al.   Fungal Biology

Sedimentary membrane lipids recycled by deep-sea benthic archaea

(2010) Yoshinori Takano et al.   Nature Geoscience

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Archaea in dry soil environments

(2009) Sari Timonen et al.   PHYTOCHEMISTRY REVIEWS

Effect of Tree Species and Mycorrhizal Colonization on the Archaeal Population of Boreal Forest Rhizospheres

(2008) M. Bomberg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Chemical composition and nutritional value of European species of wild growing mushrooms: A review

(2008) Pavel Kalač   FOOD CHEMISTRY

Chemical Composition and Biological Properties of Portuguese Wild Mushrooms: A Comprehensive Study

(2008) Lillian Barros et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Significant contribution of Archaea to extant biomass in marine subsurface sediments

(2008) Julius S. Lipp et al.   NATURE