Investigation on the Evolution of Shiga Toxin-Converting Phages Based on Whole Genome Sequencing

Prediction, Diversity, and Genomic Analysis of Temperate Phages Induced From Shiga Toxin-Producing Escherichia coli Strains

(2020) Yujie Zhang et al.   Frontiers in Microbiology

Molecular detection of Shiga toxin–producing and antibiotic-resistant Escherichia coli isolates from buffaloes in southwest of Iran

(2019) Sanaz Dehdashti et al.   TROPICAL ANIMAL HEALTH AND PRODUCTION

Comparative genomics reveals a lack of evidence for pigeons as a main source of stx2f-carrying Escherichia coli causing disease in humans and the common existence of hybrid Shiga toxin-producing and enteropathogenic E. coli pathotypes

(2019) Angela H. A. M. van Hoek et al.   BMC GENOMICS

Escherichia coli strains producing a novel Shiga toxin 2 subtype circulate in China

(2019) Xi Yang et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Prevalence and characteristics of Shiga toxin-producing Escherichia coli in finishing pigs: Implications on public health

(2018) Wonhee Cha et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Growth advantage of Escherichia coli O104:H4 strains on 5- N -acetyl-9- O -acetyl neuraminic acid as a carbon source is dependent on heterogeneous phage-Borne nanS-p esterases

(2018) Nadja Saile et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Characterization of a novel plasmid encoding F4-like fimbriae present in a Shiga-toxin producing enterotoxigenic Escherichia coli isolated during the investigation on a case of hemolytic-uremic syndrome

(2018) Valeria Michelacci et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Identification and pathogenomic analysis of an Escherichia coli strain producing a novel Shiga toxin 2 subtype

(2018) Xiangning Bai et al.   Scientific Reports

Toxigenic properties and stx phage characterization of Escherichia coli O157 isolated from animal sources in a developing country setting

(2018) Mahdia Rahman et al.   BMC MICROBIOLOGY

Factors in the emergence of serious human infections associated with highly pathogenic strains of shiga toxin-producing Escherichia coli

(2018) Mohamed A. Karmali   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Comparative Genomics and Characterization of the Late Promoter pR’ from Shiga Toxin Prophages in Escherichia coli

(2018) Ling Zhang et al.   Viruses-Basel

Subtyping Escherichia coli Virulence Genes Isolated from Feces of Beef Cattle and Clinical Cases in Alberta

(2017) Renata Tostes et al.   Foodborne Pathogens and Disease

Shiga Toxin Subtypes and Virulence Genes in Escherichia coli Isolated from Cattle

(2017) Yumi Akiyama et al.   JAPANESE JOURNAL OF INFECTIOUS DISEASES

Virulence genes, Shiga toxin subtypes, major O-serogroups, and phylogenetic background of Shiga toxin-producing Escherichia coli strains isolated from cattle in Iran

(2017) Maziar Jajarmi et al.   MICROBIAL PATHOGENESIS

Attribution of human infections with Shiga toxin-producing Escherichia coli (STEC) to livestock sources and identification of source-specific risk factors, The Netherlands (2010-2014)

(2017) L. Mughini-Gras et al.   Zoonoses and Public Health

Use of the Escherichia coli Identification Microarray for Characterizing the Health Risks of Shiga Toxin–Producing Escherichia coli Isolated from Foods

(2016) DAVID W. LACHER et al.   JOURNAL OF FOOD PROTECTION

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Molecular Characterization of Shiga Toxin-Producing Escherichia coli Strains Isolated in Poland

(2016) Aleksandra Januszkiewicz et al.   Polish Journal of Microbiology

Characterization of Shiga Toxin Subtypes and Virulence Genes in Porcine Shiga Toxin-Producing Escherichia coli

(2016) Gian Marco Baranzoni et al.   Frontiers in Microbiology

Protozoan Predation of Escherichia coli O157:H7 Is Unaffected by the Carriage of Shiga Toxin-Encoding Bacteriophages

(2016) Carrie E. Schmidt et al.   PLoS One

Shiga Toxin Producing Escherichia coli

(2015) Allen Bryan et al.   CLINICS IN LABORATORY MEDICINE

Shiga toxins and stx phages: highly diverse entities

(2015) Alejandra Krüger et al.   MICROBIOLOGY-SGM

A new perspective on lysogeny: prophages as active regulatory switches of bacteria

(2015) Ron Feiner et al.   NATURE REVIEWS MICROBIOLOGY

Orione, a web-based framework for NGS analysis in microbiology

(2014) Gianmauro Cuccuru et al.   BIOINFORMATICS

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Identification and Characterization of a Peculiarvtx2-Converting Phage Frequently Present in Verocytotoxin-Producing Escherichia coli O157 Isolated from Human Infections

(2014) Rosangela Tozzoli et al.   INFECTION AND IMMUNITY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative genomics of Shiga toxin encoding bacteriophages

(2012) Darren L Smith et al.   BMC GENOMICS

Multicenter Evaluation of a Sequence-Based Protocol for Subtyping Shiga Toxins and Standardizing Stx Nomenclature

(2012) F. Scheutz et al.   JOURNAL OF CLINICAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Comparative Genomics and stx Phage Characterization of LEE-Negative Shiga Toxin-Producing Escherichia coli

(2012) Susan R. Steyert et al.   Frontiers in Cellular and Infection Microbiology

Shiga Toxin Subtypes Display Dramatic Differences in Potency

(2011) Cynthia A. Fuller et al.   INFECTION AND IMMUNITY

Bacteriophages and their genomes

(2011) Graham F Hatfull et al.   Current Opinion in Virology

Verotoxins in Bovine and Meat Verotoxin-ProducingEscherichia coliIsolates: Type, Number of Variants, and Relationship to Cytotoxicity

(2010) Alejandra Krüger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Circoletto: visualizing sequence similarity with Circos

(2010) N. Darzentas   BIOINFORMATICS

Activatable Shiga toxin 2d (Stx2d) in STEC strains isolated from cattle and sheep at slaughter

(2008) Taurai Tasara et al.   VETERINARY MICROBIOLOGY