Vitamin Biosynthesis by Human Gut Butyrate-Producing Bacteria and Cross-Feeding in Synthetic Microbial Communities

β‐glucan is a major growth substrate for human gut bacteria related to Coprococcus eutactus

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Dietary Nutrients Involved in One-Carbon Metabolism and Colonic Mucosa-Associated Gut Microbiome in Individuals with an Endoscopically Normal Colon

(2019) Shawn Gurwara et al.   Nutrients

Metagenomic analysis of microbe-mediated vitamin metabolism in the human gut microbiome

(2019) Promi Das et al.   BMC GENOMICS

B-Vitamin Sharing Promotes Stability of Gut Microbial Communities

(2019) Vandana Sharma et al.   Frontiers in Microbiology

Micronutrient Requirements and Sharing Capabilities of the Human Gut Microbiome

(2019) Dmitry A. Rodionov et al.   Frontiers in Microbiology

Reconstructing functional networks in the human intestinal tract using synthetic microbiomes

(2019) Sudarshan A Shetty et al.   CURRENT OPINION IN BIOTECHNOLOGY

Vitamins for the Gut Microbiome

(2019) Robert E. Steinert et al.   TRENDS IN MOLECULAR MEDICINE

Flavin-Based Electron Bifurcation, A New Mechanism of Biological Energy Coupling

(2018) Wolfgang Buckel et al.   CHEMICAL REVIEWS

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Deciphering microbial interactions in synthetic human gut microbiome communities

(2018) Ophelia S Venturelli et al.   Molecular Systems Biology

Ecology and evolution of metabolic cross-feeding interactions in bacteria

(2018) Glen D'Souza et al.   NATURAL PRODUCT REPORTS

Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics

(2018) Morgan N. Price et al.   PLoS Genetics

Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies

(2018) Melanie Tramontano et al.   Nature Microbiology

Uneven distribution of cobamide biosynthesis and dependence in bacteria predicted by comparative genomics

(2018) Amanda N. Shelton et al.   ISME Journal

Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community

(2018) Kevin D'hoe et al.   eLife

Microbial nutrient niches in the gut

(2017) Fátima C. Pereira et al.   ENVIRONMENTAL MICROBIOLOGY

Specific substrate-driven changes in human faecal microbiota composition contrast with functional redundancy in short-chain fatty acid production

(2017) Nicole Reichardt et al.   ISME Journal

Underlying mechanisms for syntrophic metabolism of essential enzyme cofactors in microbial communities

(2017) Margaret F Romine et al.   ISME Journal

Amino Acid Absorption in the Large Intestine of Humans and Porcine Models

(2017) Nikkie van der Wielen et al.   JOURNAL OF NUTRITION

Accessible, curated metagenomic data through ExperimentHub

(2017) Edoardo Pasolli et al.   NATURE METHODS

Reciprocal Prioritization to Dietary Glycans by Gut Bacteria in a Competitive Environment Promotes Stable Coexistence

(2017) Yunus E. Tuncil et al.   mBio

Microbial Metabolic Networks at the Mucus Layer Lead to Diet-Independent Butyrate and Vitamin B 12 Production by Intestinal Symbionts

(2017) Clara Belzer et al.   mBio

A structural phylogeny for understanding 2-oxoacid oxidoreductase function

(2016) Marcus I Gibson et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Formation of propionate and butyrate by the human colonic microbiota

(2016) Petra Louis et al.   ENVIRONMENTAL MICROBIOLOGY

The prebiotic concept and human health: a changing landscape with riboflavin as a novel prebiotic candidate?

(2016) R E Steinert et al.   EUROPEAN JOURNAL OF CLINICAL NUTRITION

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

(2016) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

Genomic Analysis of the Human Gut Microbiome Suggests Novel Enzymes Involved in Quinone Biosynthesis

(2016) Dmitry A. Ravcheev et al.   Frontiers in Microbiology

Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

(2015) Fredrik Bäckhed et al.   Cell Host & Microbe

Anaerobic biosynthesis of the lower ligand of vitamin B12

(2015) Amrita B. Hazra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Role of Microbial Amino Acid Metabolism in Host Metabolism

(2015) Evelien Neis et al.   Nutrients

Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes

(2015) Stefanía Magnúsdóttir et al.   Frontiers in Genetics

Human Gut Microbes Use Multiple Transporters to Distinguish Vitamin B12 Analogs and Compete in the Gut

(2014) Patrick H. Degnan et al.   Cell Host & Microbe

Functional Metabolic Map of Faecalibacterium prausnitzii, a Beneficial Human Gut Microbe

(2014) A. Heinken et al.   JOURNAL OF BACTERIOLOGY

The gut microbiota, bacterial metabolites and colorectal cancer

(2014) Petra Louis et al.   NATURE REVIEWS MICROBIOLOGY

Recent advances in transport of water-soluble vitamins in organs of the digestive system: a focus on the colon and the pancreas

(2013) Hamid M. Said   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Ammonia production by human faecal bacteria, and the enumeration, isolation and characterization of bacteria capable of growth on peptides and amino acids

(2013) Anthony J Richardson et al.   BMC MICROBIOLOGY

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

How Can Faecalibacterium prausnitzii Employ Riboflavin for Extracellular Electron Transfer?

(2012) M. Tanweer Khan et al.   ANTIOXIDANTS & REDOX SIGNALING

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

(2012) Jian Ye et al.   BMC BIOINFORMATICS

The gut anaerobe Faecalibacterium prausnitzii uses an extracellular electron shuttle to grow at oxic–anoxic interphases

(2012) M Tanweer Khan et al.   ISME Journal

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

The enzymes of biotin dependent CO2metabolism: What structures reveal about their reaction mechanisms

(2012) Grover L. Waldrop et al.   PROTEIN SCIENCE

Amino acid metabolism in intestinal bacteria: links between gut ecology and host health

(2010) Zhao-Lai Dai   Frontiers in Bioscience-Landmark

Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine

(2009) Petra Louis et al.   FEMS MICROBIOLOGY LETTERS

Products of the Colonic Microbiota Mediate the Effects of Diet on Colon Cancer Risk

(2009) Stephen J. D. O'Keefe et al.   JOURNAL OF NUTRITION

Intestinal Microbial Contribution to Metabolic Leucine Input in Adult Men

(2008) Tony Raj et al.   JOURNAL OF NUTRITION