Uneven distribution of cobamide biosynthesis and dependence in bacteria predicted by comparative genomics
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Uneven distribution of cobamide biosynthesis and dependence in bacteria predicted by comparative genomics
Authors
Keywords
-
Journal
ISME Journal
Volume -, Issue -, Pages -
Publisher
Springer Nature America, Inc
Online
2018-11-15
DOI
10.1038/s41396-018-0304-9
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Unique Biochemical and Sequence Features Enable BluB To Destroy Flavin and Distinguish BluB from the Flavin Monooxygenase Superfamily
- (2018) Amrita B. Hazra et al. BIOCHEMISTRY
- The Methanosarcina mazei MM2060 Gene Encodes a Bifunctional Kinase/Decarboxylase Enzyme Involved in Cobamide Biosynthesis
- (2018) Norbert K. Tavares et al. BIOCHEMISTRY
- Selective Utilization of Benzimidazolyl-Norcobamides as Cofactors by the Tetrachloroethene Reductive Dehalogenase of Sulfurospirillum multivorans
- (2018) Sebastian Keller et al. JOURNAL OF BACTERIOLOGY
- Identification and quantitation of cobalamin and cobalamin analogues in human feces
- (2018) Robert H Allen et al. AMERICAN JOURNAL OF CLINICAL NUTRITION
- Purinyl-cobamide is a native prosthetic group of reductive dehalogenases
- (2017) Jun Yan et al. Nature Chemical Biology
- The roles of B vitamins in phytoplankton nutrition: new perspectives and prospects
- (2017) Katherine E. Helliwell NEW PHYTOLOGIST
- A comprehensive software suite for protein family construction and functional site prediction
- (2017) David Renfrew Haft et al. PLoS One
- The Exometabolome of Two Model Strains of the Roseobacter Group: A Marketplace of Microbial Metabolites
- (2017) Gerrit Wienhausen et al. Frontiers in Microbiology
- In Vitro Characterization and Concerted Function of Three Core Enzymes of a Glycyl Radical Enzyme - Associated Bacterial Microcompartment
- (2017) Jan Zarzycki et al. Scientific Reports
- An Expanded Transposon Mutant Library Reveals that Vibrio fischeri δ-Aminolevulinate Auxotrophs Can Colonize Euprymna scolopes
- (2016) Noreen L. Lyell et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Cyanobacteria and Eukaryotic Algae Use Different Chemical Variants of Vitamin B12
- (2016) Katherine Emma Helliwell et al. CURRENT BIOLOGY
- Evidence for quorum sensing and differential metabolite production by a marine bacterium in response to DMSP
- (2016) Winifred M Johnson et al. ISME Journal
- Use of plankton-derived vitamin B1 precursors, especially thiazole-related precursor, by key marine picoeukaryotic phytoplankton
- (2016) Ryan W Paerl et al. ISME Journal
- TheSMUL_1544Gene Product Governs Norcobamide Biosynthesis in the Tetrachloroethene-Respiring Bacterium Sulfurospirillum multivorans
- (2016) Sebastian Keller et al. JOURNAL OF BACTERIOLOGY
- Salmonella entericasynthesizes 5,6-dimethylbenzimidazolyl-(DMB)-α-riboside. Why some Firmicutes do not require the canonical DMB activation system to synthesize adenosylcobalamin
- (2016) Theodoric A. Mattes et al. MOLECULAR MICROBIOLOGY
- Experimental Strategies for Functional Annotation and Metabolism Discovery: Targeted Screening of Solute Binding Proteins and Unbiased Panning of Metabolomes
- (2015) Matthew W. Vetting et al. BIOCHEMISTRY
- The corrinoid cofactor of reductive dehalogenases affects dechlorination rates and extents in organohalide-respiring Dehalococcoides mccartyi
- (2015) Jun Yan et al. ISME Journal
- Anaerobic 5-Hydroxybenzimidazole Formation from Aminoimidazole Ribotide: An Unanticipated Intersection of Thiamin and Vitamin B12 Biosynthesis
- (2015) Angad P. Mehta et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Unusual biology across a group comprising more than 15% of domain Bacteria
- (2015) Christopher T. Brown et al. NATURE
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Anaerobic biosynthesis of the lower ligand of vitamin B12
- (2015) Amrita B. Hazra et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes
- (2015) Stefanía Magnúsdóttir et al. Frontiers in Genetics
- Sustainable Growth of Dehalococcoides mccartyi 195 by Corrinoid Salvaging and Remodeling in Defined Lactate-Fermenting Consortia
- (2014) Yujie Men et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Regiospecific Formation of Cobamide Isomers Is Directed by CobT
- (2014) Terence S. Crofts et al. BIOCHEMISTRY
- Human Gut Microbes Use Multiple Transporters to Distinguish Vitamin B12 Analogs and Compete in the Gut
- (2014) Patrick H. Degnan et al. Cell Host & Microbe
- Vitamin B 12 as a Modulator of Gut Microbial Ecology
- (2014) Patrick H. Degnan et al. Cell Metabolism
- Radical S-Adenosylmethionine Enzymes
- (2014) Joan B. Broderick et al. CHEMICAL REVIEWS
- Identification of specific corrinoids reveals corrinoid modification in dechlorinating microbial communities
- (2014) Yujie Men et al. ENVIRONMENTAL MICROBIOLOGY
- Expanded microbial genome coverage and improved protein family annotation in the COG database
- (2014) Michael Y. Galperin et al. NUCLEIC ACIDS RESEARCH
- A bioassay for the detection of benzimidazoles reveals their presence in a range of environmental samples
- (2014) Terence S. Crofts et al. Frontiers in Microbiology
- Thermotoga lettingae Can Salvage Cobinamide To Synthesize Vitamin B12
- (2013) Nicholas C. Butzin et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Cobamide Structure Depends on Both Lower Ligand Availability and CobT Substrate Specificity
- (2013) Terence S. Crofts et al. CHEMISTRY & BIOLOGY
- Analysis of Substrate Specificity in CobT Homologs Reveals Widespread Preference for DMB, the Lower Axial Ligand of Vitamin B12
- (2013) Amrita B. Hazra et al. CHEMISTRY & BIOLOGY
- Exogenous 5,6-dimethylbenzimidazole caused production of a non-functional tetrachloroethene reductive dehalogenase inSulfurospirillum multivorans
- (2013) Sebastian Keller et al. ENVIRONMENTAL MICROBIOLOGY
- Chlamydomonas reinhardtii thermal tolerance enhancement mediated by a mutualistic interaction with vitamin B12-producing bacteria
- (2013) Bo Xie et al. ISME Journal
- Growth Inhibition of Sporomusa ovata by Incorporation of Benzimidazole Bases into Cobamides
- (2013) K. C. Mok et al. JOURNAL OF BACTERIOLOGY
- The Genetic Basis for Bacterial Mercury Methylation
- (2013) J. M. Parks et al. SCIENCE
- Unexpected Specificity of Interspecies Cobamide Transfer from Geobacter spp. to Organohalide-Respiring Dehalococcoides mccartyi Strains
- (2012) Jun Yan et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Versatility in Corrinoid Salvaging and Remodeling Pathways Supports Corrinoid-Dependent Metabolism in Dehalococcoides mccartyi
- (2012) Shan Yi et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Structural Insights into the Function of the Nicotinate Mononucleotide:phenol/p-cresol Phosphoribosyltransferase (ArsAB) Enzyme from Sporomusa ovata
- (2012) Sean A. Newmister et al. BIOCHEMISTRY
- Mutualistic interactions between vitamin B12-dependent algae and heterotrophic bacteria exhibit regulation
- (2012) Elena Kazamia et al. ENVIRONMENTAL MICROBIOLOGY
- Genome Reduction and Co-evolution between the Primary and Secondary Bacterial Symbionts of Psyllids
- (2012) Daniel B. Sloan et al. MOLECULAR BIOLOGY AND EVOLUTION
- TIGRFAMs and Genome Properties in 2013
- (2012) Daniel H. Haft et al. NUCLEIC ACIDS RESEARCH
- The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss
- (2012) J. J. Morris et al. mBio
- Vitamin B12 biosynthesis gene diversity in the Ross Sea: the identification of a new group of putative polar B12 biosynthesizers
- (2011) Erin M. Bertrand et al. ENVIRONMENTAL MICROBIOLOGY
- ArsAB, a novel enzyme from Sporomusa ovata activates phenolic bases for adenosylcobamide biosynthesis
- (2011) Chi Ho Chan et al. MOLECULAR MICROBIOLOGY
- IMG: the integrated microbial genomes database and comparative analysis system
- (2011) V. M. Markowitz et al. NUCLEIC ACIDS RESEARCH
- A new pathway for the synthesis of α-ribazole-phosphate in Listeria innocua
- (2010) Michael J. Gray et al. MOLECULAR MICROBIOLOGY
- Sinorhizobium melilotiRequires a Cobalamin-Dependent Ribonucleotide Reductase for Symbiosis With Its Plant Host
- (2010) Michiko E. Taga et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Jalview Version 2--a multiple sequence alignment editor and analysis workbench
- (2009) A. M. Waterhouse et al. BIOINFORMATICS
- In Vivo Analysis of Cobinamide Salvaging in Rhodobacter sphaeroides Strain 2.4.1
- (2009) M. J. Gray et al. JOURNAL OF BACTERIOLOGY
- Apparent ruminal synthesis and intestinal disappearance of vitamin B12 and its analogs in dairy cows
- (2009) C.L. Girard et al. JOURNAL OF DAIRY SCIENCE
- The cobinamide amidohydrolase (cobyric acid-forming) CbiZ enzyme: a critical activity of the cobamide remodelling system ofRhodobacter sphaeroides
- (2009) Michael J. Gray et al. MOLECULAR MICROBIOLOGY
- Convergent evolution of metabolic roles in bacterial co-symbionts of insects
- (2009) J. P. McCutcheon et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Acetogenesis and the Wood–Ljungdahl pathway of CO2 fixation
- (2008) Stephen W. Ragsdale et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- Comparative Genome Analysis of Lactobacillus reuteri and Lactobacillus fermentum Reveal a Genomic Island for Reuterin and Cobalamin Production
- (2008) H. Morita et al. DNA RESEARCH
- Quantitative determination of 5-aminolaevulinic acid and its esters in cell lysates by HPLC-fluorescence
- (2008) F GIUNTINI et al. JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now