Measles virus and rinderpest virus divergence dated to the sixth century BCE

Bayesian Inference of Evolutionary Histories under Time-Dependent Substitution Rates

(2019) Jade Vincent Membrebe et al.   MOLECULAR BIOLOGY AND EVOLUTION

BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics

(2019) Daniel L Ayres et al.   SYSTEMATIC BIOLOGY

Experimental infection of cattle with wild type peste-des-petits-ruminants virus – Their role in its maintenance and spread

(2019) Emmanuel Couacy-Hymann et al.   RESEARCH IN VETERINARY SCIENCE

Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival

(2019) Oliver Smith et al.   PLOS BIOLOGY

Measles virus infection diminishes preexisting antibodies that offer protection from other pathogens

(2019) Michael J. Mina et al.   SCIENCE

Domestication of cattle: two or three events?

(2018) Daniel Pitt et al.   Evolutionary Applications

Ancient human parvovirus B19 in Eurasia reveals its long-term association with humans

(2018) Barbara Mühlemann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Neolithic and medieval virus genomes reveal complex evolution of hepatitis B

(2018) Ben Krause-Kyora et al.   eLife

Ancient hepatitis B viruses from the Bronze Age to the Medieval period

(2018) Barbara Mühlemann et al.   NATURE

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Measles

(2017) William J Moss   LANCET

Insight into the global evolution of Rodentia associated Morbilli-related paramyxoviruses

(2017) Wissem Ghawar et al.   Scientific Reports

17 th Century Variola Virus Reveals the Recent History of Smallpox

(2016) Ana T. Duggan et al.   CURRENT BIOLOGY

Time-Dependent Rate Phenomenon in Viruses

(2016) Pakorn Aiewsakun et al.   JOURNAL OF VIROLOGY

Time-dependent estimates of molecular evolutionary rates: evidence and causes

(2015) Simon Y. W. Ho et al.   MOLECULAR ECOLOGY

Molecular evolution of haemagglutinin (H) gene in measles virus

(2015) Hirokazu Kimura et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Domesticated animals and human infectious diseases of zoonotic origins: Domestication time matters

(2014) Serge Morand et al.   INFECTION GENETICS AND EVOLUTION

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Split diversity in constrained conservation prioritization using integer linear programming

(2014) Olga Chernomor et al.   Methods in Ecology and Evolution

The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates

(2014) Bram Vrancken et al.   PLoS Computational Biology

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rinderpest: the veterinary perspective on eradication

(2013) P. Roeder et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Variola Virus in a 300-Year-Old Siberian Mummy

(2012) Philippe Biagini et al.   NEW ENGLAND JOURNAL OF MEDICINE

Bats host major mammalian paramyxoviruses

(2012) Jan Felix Drexler et al.   Nature Communications

Agricultural intensification, priming for persistence and the emergence of Nipah virus: a lethal bat-borne zoonosis

(2011) J. R. C. Pulliam et al.   Journal of the Royal Society Interface

Purifying Selection Can Obscure the Ancient Age of Viral Lineages

(2011) Joel O. Wertheim et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterization of the complete genomic sequence of the rinderpest virus Fusan strain cattle type, which is the most classical isolate in Asia and comparison with its lapinized strain

(2011) Katsuhiko Fukai et al.   VIRUS GENES

Host Phylogeny Constrains Cross-Species Emergence and Establishment of Rabies Virus in Bats

(2010) D. G. Streicker et al.   SCIENCE

Origin of measles virus: divergence from rinderpest virus between the 11th and 12th centuries

(2010) Yuki Furuse et al.   Virology Journal

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS