Time-dependent estimates of molecular evolutionary rates: evidence and causes

Time dependency of foamy virus evolutionary rate estimates

(2015) Pakorn Aiewsakun et al.   BMC EVOLUTIONARY BIOLOGY

Declining transition/transversion ratios through time reveal limitations to the accuracy of nucleotide substitution models

(2015) Sebastián Duchêne et al.   BMC EVOLUTIONARY BIOLOGY

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone

(2015) Daniel J. Park et al.   CELL

Complete Genomes Reveal Signatures of Demographic and Genetic Declines in the Woolly Mammoth

(2015) Eleftheria Palkopoulou et al.   CURRENT BIOLOGY

The Performance of the Date-Randomization Test in Phylogenetic Analyses of Time-Structured Virus Data

(2015) Sebastián Duchêne et al.   MOLECULAR BIOLOGY AND EVOLUTION

Lack of support for the time-dependent molecular evolution hypothesis

(2015) Brent C. Emerson et al.   MOLECULAR ECOLOGY

DNA mutation clock proves tough to set

(2015) Ewen Callaway   NATURE

Evidence for recent, population-specific evolution of the human mutation rate

(2015) Kelley Harris   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Measurably evolving pathogens in the genomic era

(2015) Roman Biek et al.   TRENDS IN ECOLOGY & EVOLUTION

Endogenous viruses: Connecting recent and ancient viral evolution

(2015) Pakorn Aiewsakun et al.   VIROLOGY

Prolonged decay of molecular rate estimates for metazoan mitochondrial DNA

(2015) Martyna Molak et al.   PeerJ

Determinants of Mutation Rate Variation in the Human Germline

(2014) Laure Ségurel et al.   Annual Review of Genomics and Human Genetics

Estimation of the Spontaneous Mutation Rate in Heliconius melpomene

(2014) Peter D. Keightley et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular-clock methods for estimating evolutionary rates and timescales

(2014) Simon Y. W. Ho et al.   MOLECULAR ECOLOGY

Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates

(2014) S. Duchene et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The insect molecular clock

(2013) Simon Y W Ho et al.   AUSTRALIAN JOURNAL OF ENTOMOLOGY

Estimation of the Spontaneous Mutation Rate per Nucleotide Site in a Drosophila melanogaster Full-Sib Family

(2013) Peter D. Keightley et al.   GENETICS

A Case for the Ancient Origin of Coronaviruses

(2013) J. O. Wertheim et al.   JOURNAL OF VIROLOGY

The Human Mutation Rate Is Increasing, Even As It Slows

(2013) Gregg W.C. Thomas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans

(2013) Iñaki Comas et al.   NATURE GENETICS

Intergenerational mutation rate does not equal long-term evolutionary substitution rate

(2013) G. C. Gibb et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Properties and rates of germline mutations in humans

(2013) Catarina D. Campbell et al.   TRENDS IN GENETICS

Rates and Fitness Consequences of New Mutations in Humans

(2012) Peter D. Keightley   GENETICS

Selective Constraints Determine the Time Dependency of Molecular Rates for Human Nuclear Genomes

(2012) Sankar Subramanian et al.   Genome Biology and Evolution

Phylogenetic Estimation of Timescales Using Ancient DNA: The Effects of Temporal Sampling Scheme and Uncertainty in Sample Ages

(2012) M. Molak et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Influence of Rate Heterogeneity among Sites on the Time Dependence of Molecular Rates

(2012) Julien Soubrier et al.   MOLECULAR BIOLOGY AND EVOLUTION

Distortions in Genealogies Due to Purifying Selection

(2012) L. E. Nicolaisen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Revising the human mutation rate: implications for understanding human evolution

(2012) Aylwyn Scally et al.   NATURE REVIEWS GENETICS

The Patterns and Causes of Variation in Plant Nucleotide Substitution Rates

(2011) Brandon Gaut et al.   Annual Review of Ecology Evolution and Systematics

Time Dependency of Molecular Evolutionary Rates? Yes and No

(2011) Sankar Subramanian et al.   Genome Biology and Evolution

Expansion Dating: Calibrating Molecular Clocks in Marine Species from Expansions onto the Sunda Shelf Following the Last Glacial Maximum

(2011) E. D. Crandall et al.   MOLECULAR BIOLOGY AND EVOLUTION

Time-dependent rates of molecular evolution

(2011) SIMON Y. W. HO et al.   MOLECULAR ECOLOGY

Bayesian Estimation of Substitution Rates from Ancient DNA Sequences with Low Information Content

(2011) Simon Y. W. Ho et al.   SYSTEMATIC BIOLOGY

Viral evolution in deep time: lentiviruses and mammals

(2011) Robert J. Gifford   TRENDS IN GENETICS

Using Time-Structured Data to Estimate Evolutionary Rates of Double-Stranded DNA Viruses

(2010) C. Firth et al.   MOLECULAR BIOLOGY AND EVOLUTION

Revisiting the Insect Mitochondrial Molecular Clock: The Mid-Aegean Trench Calibration

(2010) A. Papadopoulou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Combining contemporary and ancient DNA in population genetic and phylogeographical studies

(2010) MIGUEL NAVASCUÉS et al.   Molecular Ecology Resources

Measurements of spontaneous rates of mutations in the recent past and the near future

(2010) F. A. Kondrashov et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Correcting for Purifying Selection: An Improved Human Mitochondrial Molecular Clock

(2009) Pedro Soares et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Time - the emerging dimension of plant virus studies

(2009) A. J. Gibbs et al.   JOURNAL OF GENERAL VIROLOGY

Quantitative Prediction of Molecular Clock and Ka/Ks at Short Timescales

(2009) G. I. Peterson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods

(2009) MIGUEL NAVASCUÉS et al.   MOLECULAR ECOLOGY

Time Dependency of Molecular Rates in Ancient DNA Data Sets, A Sampling Artifact?

(2009) Regis Debruyne et al.   SYSTEMATIC BIOLOGY

High mitogenomic evolutionary rates and time dependency

(2009) Sankar Subramanian et al.   TRENDS IN GENETICS

A Bayesian Evaluation of Human Mitochondrial Substitution Rates

(2008) Phillip Endicott et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Characterizing the Time Dependency of Human Mitochondrial DNA Mutation Rate Estimates

(2008) B. M. Henn et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hantavirus Evolution in Relation to Its Rodent and Insectivore Hosts: No Evidence for Codivergence

(2008) C. Ramsden et al.   MOLECULAR BIOLOGY AND EVOLUTION

Geological Dates and Molecular Rates: Fish DNA Sheds Light on Time Dependency

(2008) C. P. Burridge et al.   MOLECULAR BIOLOGY AND EVOLUTION

A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution

(2008) R. J. Gifford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA