Neolithic and medieval virus genomes reveal complex evolution of hepatitis B

The paradox of HBV evolution as revealed from a 16th century mummy

(2018) Zoe Patterson Ross et al.   PLoS Pathogens

Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico

(2018) Åshild J. Vågene et al.   Nature Ecology & Evolution

Heterogeneous recombination among Hepatitis B virus genotypes

(2017) Nadine Castelhano et al.   INFECTION GENETICS AND EVOLUTION

Mining Metagenomic Data Sets for Ancient DNA: Recommended Protocols for Authentication

(2017) Felix M. Key et al.   TRENDS IN GENETICS

Origins and Evolution of Hepatitis B Virus and Hepatitis D Virus

(2016) Margaret Littlejohn et al.   Cold Spring Harbor Perspectives in Medicine

Bat hepadnaviruses and the origins of primate hepatitis B viruses

(2016) Andrea Rasche et al.   Current Opinion in Virology

Hepatitis B virus intergenotypic recombinants worldwide: An overview

(2015) Natalia M. Araujo   INFECTION GENETICS AND EVOLUTION

Genome-wide patterns of selection in 230 ancient Eurasians

(2015) Iain Mathieson et al.   NATURE

Massive migration from the steppe was a source for Indo-European languages in Europe

(2015) Wolfgang Haak et al.   NATURE

Theories about evolutionary origins of human hepatitis B virus in primates and humans

(2014) Breno Frederico de Carvalho Dominguez Souza et al.   Brazilian Journal of Infectious Diseases

Ancient human genomes suggest three ancestral populations for present-day Europeans

(2014) Iosif Lazaridis et al.   NATURE

Pathogens and host immunity in the ancient human oral cavity

(2014) Christina Warinner et al.   NATURE GENETICS

Evolutionary rates and HBV: issues of rate estimation with Bayesian molecular methods

(2013) Remco Bouckaert et al.   ANTIVIRAL THERAPY

Accurate sex identification of ancient human remains using DNA shotgun sequencing

(2013) Pontus Skoglund et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Comparison of Medieval and Modern Mycobacterium leprae

(2013) V. J. Schuenemann et al.   SCIENCE

2000 Years of Parallel Societies in Stone Age Central Europe

(2013) R. Bollongino et al.   SCIENCE

Resolution of the type material of the Asian elephant,Elephas maximusLinnaeus, 1758 (Proboscidea, Elephantidae)

(2013) Enrico Cappellini et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Tracing hepatitis B virus to the 16th century in a Korean mummy

(2012) Gila Kahila Bar-Gal et al.   HEPATOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS