Purifying Selection Can Obscure the Ancient Age of Viral Lineages

Filoviruses are ancient and integrated into mammalian genomes

(2011) Derek J Taylor et al.   BMC EVOLUTIONARY BIOLOGY

Two-stepping through time: mammals and viruses

(2011) Nicholas R. Meyerson et al.   TRENDS IN MICROBIOLOGY

Endogenous non-retroviral RNA virus elements in mammalian genomes

(2010) Masayuki Horie et al.   NATURE

Rinderpest, Deadly for Cattle, Joins Smallpox as a Vanquished Disease

(2010) D. Normile   SCIENCE

Island Biogeography Reveals the Deep History of SIV

(2010) M. Worobey et al.   SCIENCE

Origin of measles virus: divergence from rinderpest virus between the 11th and 12th centuries

(2010) Yuki Furuse et al.   Virology Journal

Genomic Fossils Calibrate the Long-Term Evolution of Hepadnaviruses

(2010) Clément Gilbert et al.   PLOS BIOLOGY

Paleovirology—Modern Consequences of Ancient Viruses

(2010) Michael Emerman et al.   PLOS BIOLOGY

Endogenous Viral Elements in Animal Genomes

(2010) Aris Katzourakis et al.   PLoS Genetics

Unexpected Inheritance: Multiple Integrations of Ancient Bornavirus and Ebolavirus/Marburgvirus Sequences in Vertebrate Genomes

(2010) Vladimir A. Belyi et al.   PLoS Pathogens

Many-core algorithms for statistical phylogenetics

(2009) M. A. Suchard et al.   BIOINFORMATICS

Hitchhiking and the Population Genetic Structure of Avian Influenza Virus

(2009) Rubing Chen et al.   JOURNAL OF MOLECULAR EVOLUTION

Relaxed Selection and the Evolution of RNA Virus Mucin-Like Pathogenicity Factors

(2009) J. O. Wertheim et al.   JOURNAL OF VIROLOGY

Evolutionary Fingerprinting of Genes

(2009) S. L. Kosakovsky Pond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Macroevolution of Complex Retroviruses

(2009) A. Katzourakis et al.   SCIENCE

A quick fuse and the emergence of Taura syndrome virus

(2009) Joel O. Wertheim et al.   VIROLOGY

Dating the Age of the SIV Lineages That Gave Rise to HIV-1 and HIV-2

(2009) Joel O. Wertheim et al.   PLoS Computational Biology

The Evolutionary and Epidemiological Dynamics of the Paramyxoviridae

(2008) Laura W. Pomeroy et al.   JOURNAL OF MOLECULAR EVOLUTION

Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960

(2008) Michael Worobey et al.   NATURE

Rates of evolutionary change in viruses: patterns and determinants

(2008) Siobain Duffy et al.   NATURE REVIEWS GENETICS

A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution

(2008) R. J. Gifford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pacing a small cage: mutation and RNA viruses

(2008) Robert Belshaw et al.   TRENDS IN ECOLOGY & EVOLUTION

Frequent Toggling between Alternative Amino Acids Is Driven by Selection in HIV-1

(2008) Wayne Delport et al.   PLoS Pathogens