miRNet 2.0: network-based visual analytics for miRNA functional analysis and systems biology
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
miRNet 2.0: network-based visual analytics for miRNA functional analysis and systems biology
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume 48, Issue W1, Pages W244-W251
Publisher
Oxford University Press (OUP)
Online
2020-05-22
DOI
10.1093/nar/gkaa467
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Two-stage Bayesian GWAS of 9576 individuals identifies SNP regions that are targeted by miRNAs inversely expressed in Alzheimer's and cancer
- (2020) Gita A. Pathak et al. Alzheimers & Dementia
- Systems biology-based investigation of cooperating microRNAs as monotherapy or adjuvant therapy in cancer
- (2019) Xin Lai et al. NUCLEIC ACIDS RESEARCH
- MIENTURNET: an interactive web tool for microRNA-target enrichment and network-based analysis
- (2019) Valerio Licursi et al. BMC BIOINFORMATICS
- Comparison of tumour and serum specific microRNA changes dissecting their role in pancreatic ductal adenocarcinoma: a meta-analysis
- (2019) Bishnupriya Chhatriya et al. BMC CANCER
- TAM 2.0: tool for MicroRNA set analysis
- (2018) Jianwei Li et al. NUCLEIC ACIDS RESEARCH
- Identifying characteristic miRNAs-genes and risk pathways of multiple sclerosis based on bioinformatics analysis
- (2018) Deling Luo et al. Oncotarget
- Bipartite graphs in systems biology and medicine: a survey of methods and applications
- (2018) Georgios A Pavlopoulos et al. GigaScience
- Xeno-miRNet: a comprehensive database and analytics platform to explore xeno-miRNAs and their potential targets
- (2018) Yannan Fan et al. PeerJ
- miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase
- (2018) Taosheng Xu et al. BMC BIOINFORMATICS
- Arena-Idb: a platform to build human non-coding RNA interaction networks
- (2018) Vincenzo Bonnici et al. BMC BIOINFORMATICS
- Framework for microRNA variant annotation and prioritization using human population and disease datasets
- (2018) Ninad Oak et al. HUMAN MUTATION
- Investigating the Role of MicroRNA and Transcription Factor Co-regulatory Networks in Multiple Sclerosis Pathogenesis
- (2018) Nicoletta Nuzziello et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- HMDD v3.0: a database for experimentally supported human microRNA–disease associations
- (2018) Zhou Huang et al. NUCLEIC ACIDS RESEARCH
- TransmiR v2.0: an updated transcription factor-microRNA regulation database
- (2018) Zhan Tong et al. NUCLEIC ACIDS RESEARCH
- miRBase: from microRNA sequences to function
- (2018) Ana Kozomara et al. NUCLEIC ACIDS RESEARCH
- Novel determinants of mammalian primary microRNA processing revealed by systematic evaluation of hairpin-containing transcripts and human genetic variation
- (2017) Christine Roden et al. GENOME RESEARCH
- IMOTA: an interactive multi-omics tissue atlas for the analysis of human miRNA–target interactions
- (2017) Valeria Palmieri et al. NUCLEIC ACIDS RESEARCH
- DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions
- (2017) Dimitra Karagkouni et al. NUCLEIC ACIDS RESEARCH
- PCSF: An R-package for network-based interpretation of high-throughput data
- (2017) Murodzhon Akhmedov et al. PLoS Computational Biology
- A network-biology perspective of microRNA function and dysfunction in cancer
- (2016) Cameron P. Bracken et al. NATURE REVIEWS GENETICS
- miRNet - dissecting miRNA-target interactions and functional associations through network-based visual analysis
- (2016) Yannan Fan et al. NUCLEIC ACIDS RESEARCH
- Understanding microRNA-mediated gene regulatory networks through mathematical modelling
- (2016) Xin Lai et al. NUCLEIC ACIDS RESEARCH
- SNP2TFBS – a database of regulatory SNPs affecting predicted transcription factor binding site affinity
- (2016) Sunil Kumar et al. NUCLEIC ACIDS RESEARCH
- The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
- (2016) Damian Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- Bias in microRNA functional enrichment analysis
- (2015) Thomas Bleazard et al. BIOINFORMATICS
- Pathway analysis from lists of microRNAs: common pitfalls and alternative strategy
- (2015) Patrice Godard et al. NUCLEIC ACIDS RESEARCH
- Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer
- (2014) Paola Paci et al. BMC Systems Biology
- A Proteome-Scale Map of the Human Interactome Network
- (2014) Thomas Rolland et al. CELL
- Genome-wide survey of tissue-specific microRNA and transcription factor regulatory networks in 12 tissues
- (2014) Zhiyun Guo et al. Scientific Reports
- Parasite-Derived MicroRNAs in Host Serum As Novel Biomarkers of Helminth Infection
- (2014) Anna M. Hoy et al. PLoS Neglected Tropical Diseases
- Transcription factor and microRNA co-regulatory loops: important regulatory motifs in biological processes and diseases
- (2013) H.-M. Zhang et al. BRIEFINGS IN BIOINFORMATICS
- miRNA–transcription factor interactions: a combinatorial regulation of gene expression
- (2013) S. Arora et al. MOLECULAR GENETICS AND GENOMICS
- MicroRNAs as mediators of viral evasion of the immune system
- (2013) Bryan R Cullen NATURE IMMUNOLOGY
- starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data
- (2013) Jun-Hao Li et al. NUCLEIC ACIDS RESEARCH
- PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways
- (2013) Anindya Bhattacharya et al. NUCLEIC ACIDS RESEARCH
- Roles for MicroRNAs in Conferring Robustness to Biological Processes
- (2012) Margaret S. Ebert et al. CELL
- InnateDB: systems biology of innate immunity and beyond—recent updates and continuing curation
- (2012) Karin Breuer et al. NUCLEIC ACIDS RESEARCH
- Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression
- (2011) L. T. MacNeil et al. GENOME RESEARCH
- ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments
- (2010) Alexander Lachmann et al. BIOINFORMATICS
- MicroRNAs and gene regulatory networks: managing the impact of noise in biological systems
- (2010) H. Herranz et al. GENES & DEVELOPMENT
- Network medicine: a network-based approach to human disease
- (2010) Albert-László Barabási et al. NATURE REVIEWS GENETICS
- Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites
- (2010) Doron Betel et al. GENOME BIOLOGY
- ExoCarta: A compendium of exosomal proteins and RNA
- (2009) Suresh Mathivanan et al. PROTEOMICS
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started