Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats

A guide to phylogenetic metrics for conservation, community ecology and macroecology

(2016) Caroline M. Tucker et al.   BIOLOGICAL REVIEWS

Phylogenetic conservation of freshwater lake habitat preference varies between abundant bacterioplankton phyla

(2016) Marian L. Schmidt et al.   ENVIRONMENTAL MICROBIOLOGY

Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum

(2016) Stefan Spring et al.   ISME Journal

Spatiotemporal distribution of bacterioplankton functional groups along a freshwater estuary to pelagic gradient in Lake Michigan

(2016) Masanori Fujimoto et al.   JOURNAL OF GREAT LAKES RESEARCH

Metagenomic analysis of microbial communities of the sediments of the Kara Sea shelf and the Yenisei Bay

(2016) E. V. Mamaeva et al.   MICROBIOLOGY

Akkermansia muciniphila: a novel functional microbe with probiotic properties

(2016) C. Gómez-Gallego et al.   Beneficial Microbes

Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation

(2016) Janine Kamke et al.   Microbiome

Genome reduction in an abundant and ubiquitous soil bacterium ‘Candidatus Udaeobacter copiosus’

(2016) Tess E. Brewer et al.   Nature Microbiology

Microbial Community Analysis with Ribosomal Gene Fragments from Shotgun Metagenomes

(2015) Jiarong Guo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Thermally adaptive tradeoffs in closely related marine bacterial strains

(2015) Cheuk-Man Yung et al.   ENVIRONMENTAL MICROBIOLOGY

Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling

(2015) Markus V. Lindh et al.   ENVIRONMENTAL MICROBIOLOGY

Expansion of Cultured Bacterial Diversity by Large-Scale Dilution-to-Extinction Culturing from a Single Seawater Sample

(2015) Seung-Jo Yang et al.   MICROBIAL ECOLOGY

Particle-association lifestyle is a phylogenetically conserved trait in bathypelagic prokaryotes

(2015) Guillem Salazar et al.   MOLECULAR ECOLOGY

Primer and platform effects on 16S rRNA tag sequencing

(2015) Julien Tremblay et al.   Frontiers in Microbiology

RNA Preservation Agents and Nucleic Acid Extraction Method Bias Perceived Bacterial Community Composition

(2015) Ann McCarthy et al.   PLoS One

Verrucomicrobia Are Candidates for Polysaccharide-Degrading Bacterioplankton in an Arctic Fjord of Svalbard

(2014) Z. Cardman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Human and Environmental Impacts on River Sediment Microbial Communities

(2014) Sean M. Gibbons et al.   PLoS One

Microbial Diversity in Hummock and Hollow Soils of Three Wetlands on the Qinghai-Tibetan Plateau Revealed by 16S rRNA Pyrosequencing

(2014) Yongcui Deng et al.   PLoS One

Bacterioplankton communities in a high-altitude freshwater wetland

(2013) Jingxu Zhang et al.   ANNALS OF MICROBIOLOGY

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Metagenomic De Novo Assembly of an Aquatic Representative of the Verrucomicrobial Class Spartobacteria

(2013) D. P. R. Herlemann et al.   mBio

Global distribution and diversity of marine Verrucomicrobia

(2012) Sara Freitas et al.   ISME Journal

Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected Contribution of Verrucomicrobia

(2012) Manuel Martinez-Garcia et al.   PLoS One

Genomic and Physiological Characterization of the Verrucomicrobia Isolate Diplosphaera colitermitum gen. nov., sp. nov., Reveals Microaerophily and Nitrogen Fixation Genes

(2011) John T. Wertz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Lakes and reservoirs as regulators of carbon cycling and climate

(2011) Lars J. Tranvik et al.   LIMNOLOGY AND OCEANOGRAPHY

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

(2011) Gaddy T. Bergmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Nitrogen fixation by the verrucomicrobial methanotroph 'Methylacidiphilum fumariolicum' SolV

(2010) A. F. Khadem et al.   MICROBIOLOGY-SGM

Development of a 16S rRNA-targeted probe set for Verrucomicrobia and its application for fluorescence in situ hybridization in a humic lake

(2010) Julia Arnds et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Current Status and Trends in Muskegon Lake, Michigan

(2008) Alan D. Steinman et al.   JOURNAL OF GREAT LAKES RESEARCH

Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton

(2008) D. E. Hunt et al.   SCIENCE

Clone library analysis reveals an unusual composition and strong habitat partitioning of pelagic bacterial communities in Lake Tanganyika

(2007) A De Wever et al.   AQUATIC MICROBIAL ECOLOGY