Characterization and Analysis of the Full-Length Transcriptomes of Multiple Organs in Pseudotaxus chienii (W.C.Cheng) W.C.Cheng
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Characterization and Analysis of the Full-Length Transcriptomes of Multiple Organs in Pseudotaxus chienii (W.C.Cheng) W.C.Cheng
Authors
Keywords
-
Journal
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
Volume 21, Issue 12, Pages 4305
Publisher
MDPI AG
Online
2020-06-18
DOI
10.3390/ijms21124305
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- In-depth transcriptome characterization uncovers distinct gene family expansions for Cupressus gigantea important to this long-lived species’ adaptability to environmental cues
- (2019) Shan-Shan Zhou et al. BMC GENOMICS
- Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters
- (2019) A. P. Vasav et al. BMC GENOMICS
- Iso-Seq analysis of the Taxus cuspidata transcriptome reveals the complexity of Taxol biosynthesis
- (2019) Xuejun Kuang et al. BMC PLANT BIOLOGY
- Involvement of Salicylic Acid in Anthracnose Infection in Tea Plants Revealed by Transcriptome Profiling
- (2019) Yun-Long Shi et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- The complexity of alternative splicing and landscape of tissue-specific expression in lotus (Nelumbo nucifera) unveiled by Illumina- and single-molecule real-time-based RNA-sequencing
- (2019) Yue Zhang et al. DNA RESEARCH
- Identification of putative key genes for coastal environments and cold adaptation in mangrove Kandelia obovata through transcriptome analysis
- (2019) Wenyue Su et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Dynamics of Plant Metabolism during Cold Acclimation
- (2019) Lisa Fürtauer et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Transcriptome profiling analysis revealed co-regulation of multiple pathways in jujube during infection by ‘ Candidatus Phytoplasma ziziphi ’
- (2018) Huiyu Wang et al. GENE
- A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing
- (2018) Bo Wang et al. GENOME RESEARCH
- Genome-wide transcriptome profiling of the medicinal plant Zanthoxylum planispinum using a single-molecule direct RNA sequencing approach
- (2018) Jung-A Kim et al. GENOMICS
- The Transcriptomic Responses of Pinus massoniana to Drought Stress
- (2018) Mingfeng Du et al. Forests
- Genome-Wide Characterization of Heat-Shock Protein 70s from Chenopodium quinoa and Expression Analyses of Cqhsp70s in Response to Drought Stress
- (2018) Jianxia Liu et al. Genes
- Full-length transcriptome sequences of ephemeral plant Arabidopsis pumila provides insight into gene expression dynamics during continuous salt stress
- (2018) Lifei Yang et al. BMC GENOMICS
- Genome-Wide Identification, Classification and Expression Analysis of the HSP Gene Superfamily in Tea Plant (Camellia sinensis)
- (2018) Jiangfei Chen et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Analysis of transcripts and splice isoforms in red clover (Trifolium pratense L.) by single-molecule long-read sequencing
- (2018) Yuehui Chao et al. BMC PLANT BIOLOGY
- Association genetics of acetophenone defence against spruce budworm in mature white spruce
- (2018) Mebarek Lamara et al. BMC PLANT BIOLOGY
- Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification
- (2018) Worawat Yuenyong et al. BMC PLANT BIOLOGY
- Genome-Wide Characterization of the sHsp Gene Family in Salix suchowensis Reveals Its Functions under Different Abiotic Stresses
- (2018) Jianbo Li et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Transcriptome analysis of drought-responsive genes regulated by hydrogen sulfide in wheat (Triticum aestivum L.) leaves
- (2017) Hua Li et al. MOLECULAR GENETICS AND GENOMICS
- The gene expression landscape of pine seedling tissues
- (2017) Rafael A. Cañas et al. PLANT JOURNAL
- Hybrid sequencing and map finding (HySeMaFi): optional strategies for extensively deciphering gene splicing and expression in organisms without reference genome
- (2017) Guogui Ning et al. Scientific Reports
- Transcriptome Assembly and Systematic Identification of Novel Cytochrome P450s in Taxus chinensis
- (2017) Weifang Liao et al. Frontiers in Plant Science
- Isoform Sequencing Provides a More Comprehensive View of the Panax ginseng Transcriptome
- (2017) Ick-Hyun Jo et al. Genes
- Non-coding RNAs and Their Roles in Stress Response in Plants
- (2017) Jingjing Wang et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Of guards, decoys, baits and traps: pathogen perception in plants by type III effector sensors
- (2016) Madiha Khan et al. CURRENT OPINION IN MICROBIOLOGY
- Over-expression of JrsHSP17.3 gene from Juglans regia confer the tolerance to abnormal temperature and NaCl stresses
- (2016) Meizhi Zhai et al. JOURNAL OF PLANT BIOLOGY
- iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases
- (2016) Yi Zheng et al. Molecular Plant
- Why do plants produce so many terpenoid compounds?
- (2016) Eran Pichersky et al. NEW PHYTOLOGIST
- De Novo Transcriptome Assembly and Characterization for the Widespread and Stress-Tolerant Conifer Platycladus orientalis
- (2016) Xian-Ge Hu et al. PLoS One
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Transcriptomic Response to Nitric Oxide Treatment in Larix olgensis Henry
- (2015) Xiaoqing Hu et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Modular organization of the white spruce (Picea glauca) transcriptome reveals functional organization and evolutionary signatures
- (2015) Elie S. M. Raherison et al. NEW PHYTOLOGIST
- Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism
- (2015) René L. Warren et al. PLANT JOURNAL
- Full-length transcriptome sequences and splice variants obtained by a combination of sequencing platforms applied to different root tissues ofSalvia miltiorrhizaand tanshinone biosynthesis
- (2015) Zhichao Xu et al. PLANT JOURNAL
- Heat Shock Proteins: A Review of the Molecular Chaperones for Plant Immunity
- (2015) Chang-Jin Park et al. Plant Pathology Journal
- Leveraging transcript quantification for fast computation of alternative splicing profiles
- (2015) Gael P. Alamancos et al. RNA
- Transcriptome profiling of cold acclimation in bermudagrass (Cynodon dactylon)
- (2015) Huisen Zhu et al. SCIENTIA HORTICULTURAE
- Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing
- (2015) Sean P. Gordon et al. PLoS One
- Molecular cloning and characterization of a cytochrome P450 taxoid 9á-hydroxylase in Ginkgo biloba cells
- (2014) Nan Zhang et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- LoRDEC: accurate and efficient long read error correction
- (2014) Leena Salmela et al. BIOINFORMATICS
- PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme
- (2014) Aimin Li et al. BMC BIOINFORMATICS
- Long Noncoding RNAs in Cell-Fate Programming and Reprogramming
- (2014) Ryan A. Flynn et al. Cell Stem Cell
- The genome of Eucalyptus grandis
- (2014) Alexander A. Myburg et al. NATURE
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Genome-Wide Analysis of Alternative Splicing in Zea mays: Landscape and Genetic Regulation
- (2014) S. R. Thatcher et al. PLANT CELL
- Global Dissection of Alternative Splicing in Paleopolyploid Soybean
- (2014) Yanting Shen et al. PLANT CELL
- Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX Families of Transcription Factors[W]
- (2014) S. J. H. Kuijt et al. PLANT PHYSIOLOGY
- Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies
- (2014) David B Neale et al. GENOME BIOLOGY
- Genome-wide analysis of the Hsp20 gene family in soybean: comprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses
- (2013) Valéria S Lopes-Caitar et al. BMC GENOMICS
- Transcriptome resources and functional characterization of monoterpene synthases for two host species of the mountain pine beetle, lodgepole pine (Pinus contorta) and jack pine (Pinus banksiana)
- (2013) Dawn E Hall et al. BMC PLANT BIOLOGY
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts
- (2013) Liang Sun et al. NUCLEIC ACIDS RESEARCH
- Recent burning of boreal forests exceeds fire regime limits of the past 10,000 years
- (2013) R. Kelly et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Recent advances in plant immunity: recognition, signaling, response, and evolution
- (2012) S. Hou et al. BIOLOGIA PLANTARUM
- De novo characterization of the Chinese fir (Cunninghamia lanceolata) transcriptome and analysis of candidate genes involved in cellulose and lignin biosynthesis
- (2012) Hua-Hong Huang et al. BMC GENOMICS
- Transcriptome survey reveals increased complexity of the alternative splicing landscape inArabidopsis
- (2012) Yamile Marquez et al. GENOME RESEARCH
- The evolution, function, structure, and expression of the plant sHSPs
- (2012) Elizabeth R. Waters JOURNAL OF EXPERIMENTAL BOTANY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- A beginner's guide to eukaryotic genome annotation
- (2012) Mark Yandell et al. NATURE REVIEWS GENETICS
- Pine terpenoid defences in the mountain pine beetle epidemic and in other conifer pest interactions: specialized enemies are eating holes into a diverse, dynamic and durable defence system
- (2012) J. Bohlmann TREE PHYSIOLOGY
- Transcriptome mining, functional characterization, and phylogeny of a large terpene synthase gene family in spruce (Picea spp.)
- (2011) Christopher I Keeling et al. BMC PLANT BIOLOGY
- Functions of ABC transporters in plants
- (2011) Tobias Kretzschmar et al. Essays in Biochemistry
- MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
- (2011) K. Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- Defence-related gene expression in bark and sapwood of Norway spruce in response to Heterobasidion parviporum and methyl jasmonate
- (2011) Nadeem Yaqoob et al. PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY
- A P450-centric view of plant evolution
- (2011) David Nelson et al. PLANT JOURNAL
- The family of terpene synthases in plants: a mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom
- (2011) Feng Chen et al. PLANT JOURNAL
- Arabidopsis Cys2/His2 Zinc-Finger Proteins AZF1 and AZF2 Negatively Regulate Abscisic Acid-Repressive and Auxin-Inducible Genes under Abiotic Stress Conditions
- (2011) K.-S. Kodaira et al. PLANT PHYSIOLOGY
- The First Insight into the Tissue Specific Taxus Transcriptome via Illumina Second Generation Sequencing
- (2011) Da Cheng Hao et al. PLoS One
- Functional Annotation, Genome Organization and Phylogeny of the Grapevine (Vitis vinifera) Terpene Synthase Gene Family Based on Genome Assembly, FLcDNA Cloning, and Enzyme Assays
- (2010) Diane M Martin et al. BMC PLANT BIOLOGY
- Deciphering the splicing code
- (2010) Yoseph Barash et al. NATURE
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Gene ontology analysis for RNA-seq: accounting for selection bias
- (2010) Matthew D Young et al. GENOME BIOLOGY
- High genetic differentiation and variation as revealed by ISSR marker in Pseudotaxus chienii (Taxaceae), an old rare conifer endemic to China
- (2009) Yingjuan Su et al. BIOCHEMICAL SYSTEMATICS AND ECOLOGY
- DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
- (2009) Likun Wang et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Plant Cytochrome CYP74 Family: Biochemical Features, Endocellular Localisation, Activation Mechanism in Plant Defence and Improvements for Industrial Applications
- (2009) Richard K. Hughes et al. CHEMBIOCHEM
- The Arabidopsis DSO/ABCG11 Transporter Affects Cutin Metabolism in Reproductive Organs and Suberin in Roots
- (2009) David Panikashvili et al. Molecular Plant
- Genetic consequences of glacial survival and postglacial colonization in Norway spruce: combined analysis of mitochondrial DNA and fossil pollen
- (2008) MARI METTE TOLLEFSRUD et al. MOLECULAR ECOLOGY
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
- Structure and function of enzymes involved in the biosynthesis of phenylpropanoids
- (2008) J.-L. Ferrer et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started