Modular organization of the white spruce (Picea glauca) transcriptome reveals functional organization and evolutionary signatures

Large-scale screening of transcription factor–promoter interactions in spruce reveals a transcriptional network involved in vascular development

(2014) Isabelle Duval et al.   JOURNAL OF EXPERIMENTAL BOTANY

Conservation and divergence of gene expression plasticity followingc. 140 million years of evolution in lodgepole pine (Pinus contorta) and interior spruce (Picea glauca × Picea engelmannii)

(2014) Sam Yeaman et al.   NEW PHYTOLOGIST

Discovering Functions of Unannotated Genes from a Transcriptome Survey of Wild Fungal Isolates

(2014) C. E. Ellison et al.   mBio

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

(2014) David B Neale et al.   GENOME BIOLOGY

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data

(2013) Inanc Birol et al.   BIOINFORMATICS

Global regulatory architecture of human, mouse and rat tissue transcriptomes

(2013) Ajay Prasad et al.   BMC GENOMICS

Development of high-density SNP genotyping arrays for white spruce (Picea glauca) and transferability to subtropical and nordic congeners

(2013) Nathalie Pavy et al.   Molecular Ecology Resources

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

Organ Evolution in Angiosperms Driven by Correlated Divergences of Gene Sequences and Expression Patterns

(2013) Ruolin Yang et al.   PLANT CELL

A Developmental Transcriptional Network for Maize Defines Coexpression Modules

(2013) G. S. Downs et al.   PLANT PHYSIOLOGY

Differential requirements for mRNA folding partially explain why highly expressed proteins evolve slowly

(2013) C. Park et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human housekeeping genes, revisited

(2013) Eli Eisenberg et al.   TRENDS IN GENETICS

Navigating the transcriptional roadmap regulating plant secondary cell wall deposition

(2013) Steven G. Hussey et al.   Frontiers in Plant Science

Time-course microarrays reveal early activation of the immune transcriptome and adipokine dysregulation leads to fibrosis in visceral adipose depots during diet-induced obesity

(2012) Eun-Young Kwon et al.   BMC GENOMICS

Transcriptome profiling in conifers and the PiceaGenExpress database show patterns of diversification within gene families and interspecific conservation in vascular gene expression

(2012) Elie Raherison et al.   BMC GENOMICS

Comparative studies of gene expression and the evolution of gene regulation

(2012) Irene Gallego Romero et al.   NATURE REVIEWS GENETICS

Towards decoding the conifer giga-genome

(2012) John Mackay et al.   PLANT MOLECULAR BIOLOGY

Overexpression of CaTLP1, a putative transcription factor in chickpea (Cicer arietinum L.), promotes stress tolerance

(2012) Vijay Wardhan et al.   PLANT MOLECULAR BIOLOGY

Global Transcriptome Analysis in Influenza-Infected Mouse Lungs Reveals the Kinetics of Innate and Adaptive Host Immune Responses

(2012) Claudia Pommerenke et al.   PLoS One

Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.)

(2011) W Walter Lorenz et al.   BMC GENOMICS

Global Transcriptome Analysis of Constitutive Resistance to the White Pine Weevil in Spruce

(2011) Sébastien Verne et al.   Genome Biology and Evolution

The evolution of gene expression levels in mammalian organs

(2011) David Brawand et al.   NATURE

Cellulose factories: advancing bioenergy production from forest trees

(2011) Eshchar Mizrachi et al.   NEW PHYTOLOGIST

A White Spruce Gene Catalog for Conifer Genome Analyses

(2011) Philippe Rigault et al.   PLANT PHYSIOLOGY

Identification of Human Housekeeping Genes and Tissue-Selective Genes by Microarray Meta-Analysis

(2011) Cheng-Wei Chang et al.   PLoS One

Expanded functions for a family of plant intracellular immune receptors beyond specific recognition of pathogen effectors

(2011) V. Bonardi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Response of living tissues of Pinus sylvestris to the saprotrophic biocontrol fungus Phlebiopsis gigantea

(2011) H. Sun et al.   TREE PHYSIOLOGY

TobEA: an atlas of tobacco gene expression from seed to senescence

(2010) Kieron D Edwards et al.   BMC GENOMICS

Understanding mechanisms underlying human gene expression variation with RNA sequencing

(2010) Joseph K. Pickrell et al.   NATURE

Seasonal reorganization of the xylem transcriptome at different tree ages reveals novel insights into wood formation in Pinus radiata

(2010) Xinguo Li et al.   NEW PHYTOLOGIST

Cold tolerance in cypress (Cupressus sempervirens L.): a physiological and molecular study

(2010) Paolo Baldi et al.   Tree Genetics & Genomes

Natural variation in expression of genes involved in xylem development in loblolly pine (Pinus taeda L.)

(2010) Sreenath Reddy Palle et al.   Tree Genetics & Genomes

Evolutionary conservation of the transcriptional network regulating secondary cell wall biosynthesis

(2010) Ruiqin Zhong et al.   TRENDS IN PLANT SCIENCE

Evaluation of the impact of single nucleotide polymorphisms and primer mismatches on quantitative PCR

(2009) Brian Boyle et al.   BMC BIOTECHNOLOGY

Gene expression in the prefrontal cortex during adolescence: implications for the onset of schizophrenia

(2009) Laura W Harris et al.   BMC Medical Genomics

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

A kinetic-based sigmoidal model for the polymerase chain reaction and its application to high-capacity absolute quantitative real-time PCR

(2008) Robert G Rutledge et al.   BMC BIOTECHNOLOGY

The rules of gene expression in plants: Organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana

(2008) Felipe F Aceituno et al.   BMC GENOMICS

Involvement of Pinus taeda MYB1 and MYB8 in phenylpropanoid metabolism and secondary cell wall biogenesis: a comparative in planta analysis

(2008) Claude Bomal et al.   JOURNAL OF EXPERIMENTAL BOTANY

Plasticity of maritime pine (Pinus pinaster) wood-forming tissues during a growing season

(2008) J. A. P. Paiva et al.   NEW PHYTOLOGIST

Identification of conserved core xylem gene sets: conifer cDNA microarray development, transcript profiling and computational analyses

(2008) Nathalie Pavy et al.   NEW PHYTOLOGIST

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Root System Architecture from Coupling Cell Shape to Auxin Transport

(2008) Marta Laskowski et al.   PLOS BIOLOGY