Seasonal effects of river flow on microbial community coalescence and diversity in a riverine network

Hydrological variations shape diversity and functional responses of streambed microbes

(2020) G. Gionchetta et al.   SCIENCE OF THE TOTAL ENVIRONMENT

In-Situ Biofilm Formation in Hyper Alkaline Environments

(2019) C. J. Charles et al.   GEOMICROBIOLOGY JOURNAL

Bacterial community and eutrophic index analysis of the East Lake

(2019) Bin Ji et al.   ENVIRONMENTAL POLLUTION

Chemical mixtures and fluorescence in situ hybridization analysis of natural microbial community in the Tiber river

(2019) Maria Ludovica Saccà et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Bacterial Abundance and Physicochemical Characteristics of Water and Sediment Associated with Hydroelectric Dam on the Lancang River China

(2019) Xia Luo et al.   International Journal of Environmental Research and Public Health

Variations in soil bacterial taxonomic profiles and putative functions in response to straw incorporation combined with N fertilization during the maize growing season

(2019) Hui Li et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Chemical and microbial diversity covary in fresh water to influence ecosystem functioning

(2019) Andrew J. Tanentzap et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of priming effect by soil organic matter stability over a broad geographic scale

(2019) Leiyi Chen et al.   Nature Communications

Mechanisms and ecological implications of the movement of bacteria in soil

(2018) Pu Yang et al.   APPLIED SOIL ECOLOGY

Application of the microbial community coalescence concept to riverine networks

(2018) India Mansour et al.   BIOLOGICAL REVIEWS

Integrating microbial biomass, composition and function to discern the level of anthropogenic activity in a river ecosystem

(2018) Kailingli Liao et al.   ENVIRONMENT INTERNATIONAL

Composition and functional diversity of microbial community across a mangrove-inhabited mudflat as revealed by 16S rDNA gene sequences

(2018) Xiaoying Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Bacterial Communities in Riparian Sediments: A Large-Scale Longitudinal Distribution Pattern and Response to Dam Construction

(2018) Juan Chen et al.   Frontiers in Microbiology

Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River

(2018) Tang Liu et al.   Microbiome

Effects of Wilting and Lactobacillus plantarum Addition on the Fermentation Quality and Microbial Community of Moringa oleifera Leaf Silage

(2018) Yi Wang et al.   Frontiers in Microbiology

A conceptual framework for understanding the biogeochemistry of dry riverbeds through the lens of soil science

(2018) María Isabel Arce et al.   EARTH-SCIENCE REVIEWS

The chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales

(2018) Hong-Yi Li et al.   Microbiome

Bacterial community composition shaped by water chemistry and geographic distance in an anthropogenically disturbed river

(2018) Peng Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Habitat-specific patterns and drivers of bacterial β-diversity in China’s drylands

(2017) Xiao-Bo Wang et al.   ISME Journal

Dynamic sediment discharge in the Hekou–Longmen region of Yellow River and soil and water conservation implications

(2017) Peng Gao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Mentholation affects the cigarette microbiota by selecting for bacteria resistant to harsh environmental conditions and selecting against potential bacterial pathogens

(2017) Jessica Chopyk et al.   Microbiome

Distinct distribution patterns of prokaryotes between sediment and water in the Yellow River estuary

(2016) Guangshan Wei et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Sediments and Soils Act as Reservoirs for Taxonomic and Functional Bacterial Diversity in the Upper Mississippi River

(2016) Christopher Staley et al.   MICROBIAL ECOLOGY

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Characteristics of aquatic bacterial community and the influencing factors in an urban river

(2016) Peng Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil

(2016) Samiran Banerjee et al.   SOIL BIOLOGY & BIOCHEMISTRY

Upstream Freshwater and Terrestrial Sources Are Differentially Reflected in the Bacterial Community Structure along a Small Arctic River and Its Estuary

(2016) Aviaja L. Hauptmann et al.   Frontiers in Microbiology

Contributions of organic and inorganic matter to sediment volume and accretion in tidal wetlands at steady state

(2016) James T. Morris et al.   Earths Future

Resilience vs. historical contingency in microbial responses to environmental change

(2015) Christine V. Hawkes et al.   ECOLOGY LETTERS

Light availability affects stream biofilm bacterial community composition and function, but not diversity

(2015) Karoline Wagner et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial diversity along a 2600 km river continuum

(2015) Domenico Savio et al.   ENVIRONMENTAL MICROBIOLOGY

Soil Parameters Drive the Structure, Diversity and Metabolic Potentials of the Bacterial Communities Across Temperate Beech Forest Soil Sequences

(2015) M. Jeanbille et al.   MICROBIAL ECOLOGY

Suppression of soil nitrification by plants

(2015) Guntur Venkata Subbarao et al.   PLANT SCIENCE

Biodiversity, community structure and function of biofilms in stream ecosystems

(2015) Katharina Besemer   RESEARCH IN MICROBIOLOGY

Interchange of entire communities: microbial community coalescence

(2015) Matthias C. Rillig et al.   TRENDS IN ECOLOGY & EVOLUTION

pH levels drive bacterial community structure in sediments of the Qiantang River as determined by 454 pyrosequencing

(2015) Shuai Liu et al.   Frontiers in Microbiology

Distribution of sediment bacterial and archaeal communities in plateau freshwater lakes

(2014) Jingxu Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Oceanographic structure drives the assembly processes of microbial eukaryotic communities

(2014) Adam Monier et al.   ISME Journal

Organic priority substances and microbial processes in river sediments subject to contrasting hydrological conditions

(2014) Annamaria Zoppini et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Climate change alters ecological strategies of soil bacteria

(2013) Sarah E. Evans et al.   ECOLOGY LETTERS

Seasonal changes in microbial community structure and activity imply winter production is linked to summer hypoxia in a large lake

(2013) Steven W. Wilhelm et al.   FEMS MICROBIOLOGY ECOLOGY

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Effects of connectivity, dispersal directionality and functional traits on the metacommunity structure of river benthic diatoms

(2013) Jing Liu et al.   JOURNAL OF BIOGEOGRAPHY

Microbial Community Assembly and Succession on Lake Sturgeon Egg Surfaces as a Function of Simulated Spawning Stream Flow Rate

(2013) Masanori Fujimoto et al.   MICROBIAL ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

Quantitative multi-year elucidation of fecal sources of waterborne pathogen contamination in the South Nation River basin using Bacteroidales microbial source tracking markers

(2013) Romain Marti et al.   WATER RESEARCH

Molecular Fingerprinting of Cyanobacteria from River Biofilms as a Water Quality Monitoring Tool

(2012) Virginia Loza et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Denitrification performance and microbial diversity in a packed-bed bioreactor using PCL as carbon source and biofilm carrier

(2012) Weizhong Wu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Microbial biofilm structure and organic matter use in mediterranean streams

(2012) Anna M. Romaní et al.   HYDROBIOLOGIA

Unraveling assembly of stream biofilm communities

(2012) Katharina Besemer et al.   ISME Journal

Microbial diversity in arctic freshwaters is structured by inoculation of microbes from soils

(2012) Byron C Crump et al.   ISME Journal

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

Soil enzymes in a changing environment: Current knowledge and future directions

(2012) Richard G. Burns et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microorganisms and their roles in fundamental biogeochemical cycles

(2011) Eugene L Madsen   CURRENT OPINION IN BIOTECHNOLOGY

Distance decay of similarity in freshwater communities: do macro- and microorganisms follow the same rules?

(2011) Anna Astorga et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Bacterial communities in sediments of the shallow Lake Dongping in China

(2011) H. Song et al.   JOURNAL OF APPLIED MICROBIOLOGY

Metacommunity theory as a multispecies, multiscale framework for studying the influence of river network structure on riverine communities and ecosystems

(2011) Bryan L. Brown et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Biofilms formed on humic substances: Response to flow conditions and carbon concentrations

(2010) A.L. Rodrigues et al.   BIORESOURCE TECHNOLOGY

Dynamics of a benthic microbial community in a riverine environment subject to hydrological fluctuations (Mulargia River, Italy)

(2010) Annamaria Zoppini et al.   HYDROBIOLOGIA

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Physical Heterogeneity Increases Biofilm Resource Use and Its Molecular Diversity in Stream Mesocosms

(2010) Gabriel Singer et al.   PLoS One

Availability of glucose and light modulates the structure and function of a microbial biofilm

(2009) Irene Ylla et al.   FEMS MICROBIOLOGY ECOLOGY

Response of the microbial community to water table variation and nutrient addition and its implications for in situ preservation of organic archaeological remains in wetland soils

(2009) Isabel Douterelo et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION