Oceanographic structure drives the assembly processes of microbial eukaryotic communities

Phagotrophy by the picoeukaryotic green alga Micromonas: implications for Arctic Oceans

(2014) Zaid M McKie-Krisberg et al.   ISME Journal

Community differentiation and population enrichment of Sargasso Sea bacterioplankton in the euphotic zone of a mesoscale mode-water eddy

(2013) Craig E. Nelson et al.   ENVIRONMENTAL MICROBIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Picomonas judraskeda Gen. Et Sp. Nov.: The First Identified Member of the Picozoa Phylum Nov., a Widespread Group of Picoeukaryotes, Formerly Known as ‘Picobiliphytes’

(2013) Ramkumar Seenivasan et al.   PLoS One

Ecological Consequences of Sea-Ice Decline

(2013) E. Post et al.   SCIENCE

Thalassiosira spp. community composition shifts in response to chemical and physical forcing in the northeast Pacific Ocean

(2013) P. Dreux Chappell et al.   Frontiers in Microbiology

Adding unaligned sequences into an existing alignment using MAFFT and LAST

(2012) Kazutaka Katoh et al.   BIOINFORMATICS

Associating microbiome composition with environmental covariates using generalized UniFrac distances

(2012) Jun Chen et al.   BIOINFORMATICS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

The International Bathymetric Chart of the Arctic Ocean (IBCAO) Version 3.0

(2012) Martin Jakobsson et al.   GEOPHYSICAL RESEARCH LETTERS

Composition of the summer photosynthetic pico and nanoplankton communities in the Beaufort Sea assessed by T-RFLP and sequences of the 18S rRNA gene from flow cytometry sorted samples

(2012) Sergio Balzano et al.   ISME Journal

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Experimentally induced habitat filtering in marine bacterial communities

(2012) M Pontarp et al.   MARINE ECOLOGY PROGRESS SERIES

Bacterial Diversity Stabilizes Community Productivity

(2012) Nico Eisenhauer et al.   PLoS One

Synthesis of integrated primary production in the Arctic Ocean: II. In situ and remotely sensed estimates

(2012) Victoria J. Hill et al.   PROGRESS IN OCEANOGRAPHY

Massive Phytoplankton Blooms Under Arctic Sea Ice

(2012) K. R. Arrigo et al.   SCIENCE

Microbes in High Arctic Snow and Implications for the Cold Biosphere

(2011) Tommy Harding et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Aligning short reads to reference alignments and trees

(2011) Simon A. Berger et al.   BIOINFORMATICS

Disentangling the spatial patterns in community composition of prokaryotic and eukaryotic lake plankton

(2011) Janne Soininen et al.   LIMNOLOGY AND OCEANOGRAPHY

Environmental forcing of phytoplankton community structure and function in the Canadian High Arctic: contrasting oligotrophic and eutrophic regions

(2011) M Ardyna et al.   MARINE ECOLOGY PROGRESS SERIES

Impact of Wind-Driven Mixing in the Arctic Ocean

(2011) Luc Rainville et al.   OCEANOGRAPHY

Disturbance regime changes the trait distribution, phylogenetic structure and community assembly of tropical rain forests

(2011) Yi Ding et al.   OIKOS

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Arctic Ocean Microbial Community Structure before and after the 2007 Record Sea Ice Minimum

(2011) André M. Comeau et al.   PLoS One

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Towards recognition of physical and geochemical change in Subarctic and Arctic Seas

(2011) Eddy Carmack et al.   PROGRESS IN OCEANOGRAPHY

Single-Cell Genomics Reveals Organismal Interactions in Uncultivated Marine Protists

(2011) H. S. Yoon et al.   SCIENCE

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Metacommunity phylogenetics: separating the roles of environmental filters and historical biogeography

(2010) Mathew A. Leibold et al.   ECOLOGY LETTERS

Opposing effects of competitive exclusion on the phylogenetic structure of communities

(2010) Margaret M. Mayfield et al.   ECOLOGY LETTERS

Communities contain closely related species during ecosystem disturbance

(2010) Matthew R. Helmus et al.   ECOLOGY LETTERS

Deepening of the nutricline and chlorophyll maximum in the Canada Basin interior, 2003-2009

(2010) Fiona A. McLaughlin et al.   GEOPHYSICAL RESEARCH LETTERS

Microbial eukaryotic distribution in a dynamic Beaufort Sea and the Arctic Ocean

(2010) C. Lovejoy et al.   JOURNAL OF PLANKTON RESEARCH

Prevalence, structure and properties of subsurface chlorophyll maxima in Canadian Arctic waters

(2010) J Martin et al.   MARINE ECOLOGY PROGRESS SERIES

The central role of diminishing sea ice in recent Arctic temperature amplification

(2010) James A. Screen et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Disentangling niche and neutral influences on community assembly: assessing the performance of community phylogenetic structure tests

(2009) Steven W. Kembel   ECOLOGY LETTERS

Estimating and controlling for spatial structure in the study of ecological communities

(2009) Pedro R. Peres-Neto et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Relative roles of niche and neutral processes in structuring a soil microbial community

(2009) Alex J Dumbrell et al.   ISME Journal

Smallest Algae Thrive As the Arctic Ocean Freshens

(2009) W. K. W. Li et al.   SCIENCE

Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples

(2009) James Robert White et al.   PLoS Computational Biology

Widespread distribution of a unique marine protistan lineage

(2008) Marie L. Cuvelier et al.   ENVIRONMENTAL MICROBIOLOGY

The role of nutricline depth in regulating the ocean carbon cycle

(2008) P. Cermeno et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA