Validation and association of candidate markers for adult migration timing and fitness in Chinook Salmon

Genetic insights into the past, present, and future of a keystone species

(2019) Krista B. Oke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic variation underlying complex life-history traits revealed by genome sequencing in Chinook salmon

(2018) Shawn R. Narum et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Selection at a genomic region of major effect is responsible for evolution of complex life histories in anadromous steelhead

(2018) Steven J. Micheletti et al.   BMC EVOLUTIONARY BIOLOGY

Improving conservation policy with genomics: a guide to integrating adaptive potential into U.S. Endangered Species Act decisions for conservation practitioners and geneticists

(2018) W. C. Funk et al.   CONSERVATION GENETICS

Genomics and conservation units: The genetic basis of adult migration timing in Pacific salmonids

(2018) Robin S. Waples et al.   Evolutionary Applications

The Peril of Gene-Targeted Conservation

(2018) Marty Kardos et al.   TRENDS IN ECOLOGY & EVOLUTION

Long-term evaluation of fitness and demographic effects of a Chinook Salmon supplementation program

(2018) Ilana Janowitz-Koch et al.   Evolutionary Applications

Anthropogenic habitat alteration leads to rapid loss of adaptive variation and restoration potential in wild salmon populations

(2018) Tasha Q. Thompson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Concepts, estimation and interpretation of SNP-based heritability

(2017) Jian Yang et al.   NATURE GENETICS

Global urban signatures of phenotypic change in animal and plant populations

(2017) Marina Alberti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The evolutionary basis of premature migration in Pacific salmon highlights the utility of genomics for informing conservation

(2017) Daniel J. Prince et al.   Science Advances

The paradox of “premature migration” by adult anadromous salmonid fishes: patterns and hypotheses

(2016) Thomas P. Quinn et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Saving the spandrels? Adaptive genomic variation in conservation and fisheries management

(2016) D. E. Pearse   JOURNAL OF FISH BIOLOGY

Genetic basis of adult migration timing in anadromous steelhead discovered through multivariate association testing

(2016) Jon E. Hess et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Reliable Detection of Loci Responsible for Local Adaptation: Inference of a Null Model through Trimming the Distribution of FST

(2015) Michael C. Whitlock et al.   AMERICAN NATURALIST

Assessing the components of adaptive capacity to improve conservation and management efforts under global change

(2015) Adrienne B. Nicotra et al.   CONSERVATION BIOLOGY

Environmental adaptation in Chinook salmon (Oncorhynchus tshawytscha) throughout their North American range

(2015) Benjamin C. Hecht et al.   MOLECULAR ECOLOGY

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

(2014) Nathan R. Campbell et al.   Molecular Ecology Resources

Monitoring Stock-Specific Abundance, Run Timing, and Straying of Chinook Salmon in the Columbia River Using Genetic Stock Identification (GSI)

(2014) Jon E. Hess et al.   NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT

Potential Factors Affecting Survival Differ by Run-Timing and Location: Linear Mixed-Effects Models of Pacific Salmonids (Oncorhynchus spp.) in the Klamath River, California

(2014) Rebecca M. Quiñones et al.   PLoS One

Adaptive potential of a Pacific salmon challenged by climate change

(2014) Nicolas J. Muñoz et al.   Nature Climate Change

Statistical Power to Detect Genetic (Co)Variance of Complex Traits Using SNP Data in Unrelated Samples

(2014) Peter M. Visscher et al.   PLoS Genetics

Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow

(2013) Kathleen G. O'Malley et al.   Evolutionary Applications

Pitfalls of predicting complex traits from SNPs

(2013) Naomi R. Wray et al.   NATURE REVIEWS GENETICS

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

Temporal variation in selection on body length and date of return in a wild population of coho salmon, Oncorhynchus kisutch

(2012) Miyako Kodama et al.   BMC EVOLUTIONARY BIOLOGY

Divergent life-history races do not represent Chinook salmon coast-wide: the importance of scale in Quaternary biogeography

(2012) Paul Moran et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Supportive breeding boosts natural population abundance with minimal negative impacts on fitness of a wild population of Chinook salmon

(2012) Maureen A. Hess et al.   MOLECULAR ECOLOGY

Genetic change for earlier migration timing in a pink salmon population

(2012) R. P. Kovach et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Using Time Series Analysis to Characterize Evolutionary and Plastic Responses to Environmental Change: A Case Study of a Shift toward Earlier Migration Date in Sockeye Salmon

(2011) Lisa G. Crozier et al.   AMERICAN NATURALIST

Environmental controls of phenology of high-latitude Chinook salmon populations of the Yukon River, North America, with application to fishery management

(2011) P. R. Mundy et al.   ICES JOURNAL OF MARINE SCIENCE

Beyond Predictions: Biodiversity Conservation in a Changing Climate

(2011) T. P. Dawson et al.   SCIENCE

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Variation explained in mixed-model association mapping

(2010) G Sun et al.   HEREDITY

Population diversity and the portfolio effect in an exploited species

(2010) Daniel E. Schindler et al.   NATURE

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

Examining Genetic Lineages of Chinook Salmon in the Columbia River Basin

(2010) Shawn R. Narum et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Sexually Antagonistic Selection, Sexual Dimorphism, and the Resolution of Intralocus Sexual Conflict

(2009) Robert M. Cox et al.   AMERICAN NATURALIST

Oceanic, riverine, and genetic influences on spring chinook salmon migration timing

(2009) James J. Anderson et al.   ECOLOGICAL APPLICATIONS

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

ORIGINAL ARTICLE: Evolutionary consequences of habitat loss for Pacific anadromous salmonids

(2008) Michelle M. McClure et al.   Evolutionary Applications

SYNTHESIS: A review of quantitative genetic components of fitness in salmonids: implications for adaptation to future change

(2008) Stephanie M. Carlson et al.   Evolutionary Applications

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

Evolutionary responses by native species to major anthropogenic changes to their ecosystems: Pacific salmon in the Columbia River hydropower system

(2007) ROBIN S. WAPLES et al.   MOLECULAR ECOLOGY

Human influences on rates of phenotypic change in wild animal populations

(2007) ANDREW P. HENDRY et al.   MOLECULAR ECOLOGY