Environmental adaptation in Chinook salmon (Oncorhynchus tshawytscha) throughout their North American range

Effects of Crossovers Between Homeologs on Inheritance and Population Genomics in Polyploid-Derived Salmonid Fishes

(2015) F. W. Allendorf et al.   JOURNAL OF HEREDITY

Is there such a thing as landscape genetics?

(2015) Rodney J. Dyer   MOLECULAR ECOLOGY

Isolation by environment in White-breasted Nuthatches (Sitta carolinensis) of the Madrean Archipelago sky islands: a landscape genomics approach

(2015) Joseph D. Manthey et al.   MOLECULAR ECOLOGY

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

Integration of Random Forest with population-based outlier analyses provides insight on the genomic basis and evolution of run timing in Chinook salmon (Oncorhynchus tshawytscha)

(2015) Marine S. O. Brieuc et al.   MOLECULAR ECOLOGY

Seven common mistakes in population genetics and how to avoid them

(2015) Patrick G. Meirmans   MOLECULAR ECOLOGY

Genes predict long distance migration and large body size in a migratory fish, Pacific lamprey

(2014) Jon E. Hess et al.   Evolutionary Applications

Detection and mapping of QTL for temperature tolerance and body size in Chinook salmon (Oncorhynchus tshawytscha) using genotyping by sequencing

(2014) Meredith V. Everett et al.   Evolutionary Applications

Relative contributions of neutral and non-neutral genetic differentiation to inform conservation of steelhead trout across highly variable landscapes

(2014) Andrew P. Matala et al.   Evolutionary Applications

Plastic and evolutionary responses to climate change in fish

(2014) Lisa G. Crozier et al.   Evolutionary Applications

Testing for Hardy–Weinberg Proportions: Have We Lost the Plot?

(2014) Robin S. Waples   JOURNAL OF HEREDITY

Genomic footprints of speciation in Atlantic eels (Anguilla anguillaandA. rostrata)

(2014) Magnus W. Jacobsen et al.   MOLECULAR ECOLOGY

Genome scans for the contemporary response to selection in quantitative traits

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Isolation by environment

(2014) Ian J. Wang et al.   MOLECULAR ECOLOGY

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Genome scan methods against more complex models: when and how much should we trust them?

(2014) Pierre de Villemereuil et al.   MOLECULAR ECOLOGY

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

(2014) Camille Berthelot et al.   Nature Communications

A Dense Linkage Map for Chinook salmon ( Oncorhynchus tshawytscha ) Reveals Variable Chromosomal Divergence After an Ancestral Whole Genome Duplication Event

(2014) Marine S. O. Brieuc et al.   G3-Genes Genomes Genetics

INTEGRATING LANDSCAPE GENOMICS AND SPATIALLY EXPLICIT APPROACHES TO DETECT LOCI UNDER SELECTION IN CLINAL POPULATIONS

(2013) Matthew R. Jones et al.   EVOLUTION

LANDSCAPE GENOMICS IN ATLANTIC SALMON (SALMO SALAR): SEARCHING FOR GENE-ENVIRONMENT INTERACTIONS DRIVING LOCAL ADAPTATION

(2013) Bourret Vincent et al.   EVOLUTION

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Putting the landscape into the genomics of trees: approaches for understanding local adaptation and population responses to changing climate

(2013) V. L. Sork et al.   Tree Genetics & Genomes

Ten years of landscape genetics

(2013) Stéphanie Manel et al.   TRENDS IN ECOLOGY & EVOLUTION

Divergent life-history races do not represent Chinook salmon coast-wide: the importance of scale in Quaternary biogeography

(2012) Paul Moran et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Monitoring adaptive genetic responses to environmental change

(2012) MICHAEL M. HANSEN et al.   MOLECULAR ECOLOGY

Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout

(2012) Benjamin C. Hecht et al.   MOLECULAR ECOLOGY

Characterizing genomic variation ofArabidopsis thaliana: the roles of geography and climate

(2012) JESSE R. LASKY et al.   MOLECULAR ECOLOGY

Population genomics of Pacific lamprey: adaptive variation in a highly dispersive species

(2012) Jon E. Hess et al.   MOLECULAR ECOLOGY

Genetic change for earlier migration timing in a pink salmon population

(2012) R. P. Kovach et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Harnessing genomics for delineating conservation units

(2012) W. Chris Funk et al.   TRENDS IN ECOLOGY & EVOLUTION

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

RADSeq: next-generation population genetics

(2011) J. W. Davey et al.   Briefings in Functional Genomics

A conserved haplotype controls parallel adaptation in geographically distant salmonid populations

(2011) MICHAEL R. MILLER et al.   MOLECULAR ECOLOGY

Quantifying effects of environmental and geographical factors on patterns of genetic differentiation

(2011) CHENG-RUEI LEE et al.   MOLECULAR ECOLOGY

Genetic differentiation of Alaska Chinook salmon: the missing link for migratory studies

(2011) WILLIAM D. TEMPLIN et al.   Molecular Ecology Resources

Differences in Thermal Tolerance Among Sockeye Salmon Populations

(2011) E. J. Eliason et al.   SCIENCE

Resolving Adaptive and Demographic Divergence among Chinook Salmon Populations in the Columbia River Basin

(2011) Andrew P. Matala et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Single-Nucleotide Polymorphism (SNP) Loci Correlated with Run Timing in Adult Chinook Salmon from the Columbia River Basin

(2011) Jon E. Hess et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Comparative landscape genetic analysis of three Pacific salmon species from subarctic North America

(2010) Jeffrey B. Olsen et al.   CONSERVATION GENETICS

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Using hierarchical models to estimate effects of ocean anomalies on north-west Pacific Chinook salmon Oncorhynchus tshawytscha recruitment

(2010) R. Sharma et al.   JOURNAL OF FISH BIOLOGY

Forward Regression for Ultra-High Dimensional Variable Screening

(2010) Hansheng Wang   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Adaptation of redband trout in desert and montane environments

(2010) SHAWN R. NARUM et al.   MOLECULAR ECOLOGY

Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change

(2010) VICTORIA L. SORK et al.   MOLECULAR ECOLOGY

Adaptation – not by sweeps alone

(2010) Jonathan K. Pritchard et al.   NATURE REVIEWS GENETICS

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

PASSaGE: Pattern Analysis, Spatial Statistics and Geographic Exegesis. Version 2

(2010) Michael S. Rosenberg et al.   Methods in Ecology and Evolution

Estimates of linkage disequilibrium and effective population size in rainbow trout

(2009) Caird E Rexroad et al.   BMC GENETICS

Temperature and Flow Effects on Migration Timing of Chinook Salmon Smolts

(2009) Gregory E. Sykes et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Distribution and Migration of Juvenile Chinook Salmon Derived from Coded Wire Tag Recoveries along the Continental Shelf of Western North America

(2009) M. Trudel et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method

(2008) Tiago Antao et al.   BMC BIOINFORMATICS

ECOLOGICAL GENETICS IN THE NORTH ATLANTIC: ENVIRONMENTAL GRADIENTS AND ADAPTATION AT SPECIFIC LOCI

(2008) Paul S. Schmidt et al.   ECOLOGY

Disentangling interactions between adaptive divergence and gene flow when ecology drives diversification

(2008) Katja Räsänen et al.   ECOLOGY LETTERS

HETEROGENEOUS GENOMIC DIFFERENTIATION BETWEEN WALKING-STICK ECOTYPES: "ISOLATION BY ADAPTATION" AND MULTIPLE ROLES FOR DIVERGENT SELECTION

(2008) Patrik Nosil et al.   EVOLUTION

PERSPECTIVE: Potential responses to climate change in organisms with complex life histories: evolution and plasticity in Pacific salmon

(2008) L. G. Crozier et al.   Evolutionary Applications

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources