Exploring possible DNA structures in real-time polymerase kinetics using Pacific Biosciences sequencer data
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Title
Exploring possible DNA structures in real-time polymerase kinetics using Pacific Biosciences sequencer data
Authors
Keywords
DNA structure, G-quadruplex, Z-DNA, Polymerase stalling, Wavelets
Journal
BMC BIOINFORMATICS
Volume 16, Issue 1, Pages -
Publisher
Springer Nature
Online
2015-01-27
DOI
10.1186/s12859-014-0449-0
References
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Note: Only part of the references are listed.- Enhanced 5-methylcytosine detection in single-molecule, real-time sequencing via Tet1 oxidation
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- (2013) Maria Lluch-Senar et al. PLoS Genetics
- Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases
- (2012) E. E. Schadt et al. GENOME RESEARCH
- Sequencing the unsequenceable: Expanded CGG-repeat alleles of the fragile X gene
- (2012) E. W. Loomis et al. GENOME RESEARCH
- Single-molecule investigation of G-quadruplex using a nanopore sensor
- (2012) Jiwook Shim et al. METHODS
- Quadruplex-single nucleotide polymorphisms (Quad-SNP) influence gene expression difference among individuals
- (2012) Aradhita Baral et al. NUCLEIC ACIDS RESEARCH
- The methylomes of six bacteria
- (2012) Iain A. Murray et al. NUCLEIC ACIDS RESEARCH
- QGRS-H Predictor: a web server for predicting homologous quadruplex forming G-rich sequence motifs in nucleotide sequences
- (2012) Camille Menendez et al. NUCLEIC ACIDS RESEARCH
- The Role of Methylation in the Intrinsic Dynamics of B- and Z-DNA
- (2012) Nuri A. Temiz et al. PLoS One
- FMR1 CGG repeat lengths mediate different regulation of reporter gene expression in comparative transient and locus specific integration assays
- (2011) Christina Sølvsten et al. GENE
- Non-B DNA-forming Sequences and WRN Deficiency Independently Increase the Frequency of Base Substitution in Human Cells
- (2011) Albino Bacolla et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine
- (2011) Chun-Xiao Song et al. NATURE METHODS
- G4 motifs correlate with promoter-proximal transcriptional pausing in human genes
- (2011) J. Eddy et al. NUCLEIC ACIDS RESEARCH
- Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing
- (2011) Tyson A. Clark et al. NUCLEIC ACIDS RESEARCH
- Mapping the sequences of potential guanine quadruplex motifs
- (2011) Alan K. Todd et al. NUCLEIC ACIDS RESEARCH
- Direct detection of DNA methylation during single-molecule, real-time sequencing
- (2010) Benjamin A Flusberg et al. NATURE METHODS
- 5'-UTR G-quadruplex structures acting as translational repressors
- (2010) J.-D. Beaudoin et al. NUCLEIC ACIDS RESEARCH
- Z-DNA-forming silencer in the first exon regulates human ADAM-12 gene expression
- (2010) B. K. Ray et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Minute negative superhelicity is sufficient to induce the B-Z transition in the presence of low tension
- (2010) M. Lee et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The role of G-quadruplex/i-motif secondary structures as cis-acting regulatory elements
- (2010) Samantha Kendrick et al. PURE AND APPLIED CHEMISTRY
- Predicting and understanding the stability of G-quadruplexes
- (2009) Oliver Stegle et al. BIOINFORMATICS
- Identification and Prevention of Genotyping Errors Caused by G-Quadruplex- and i-Motif-Like Sequences
- (2009) J. J. Wenzel et al. CLINICAL CHEMISTRY
- The Importance of Negative Superhelicity in Inducing the Formation of G-Quadruplex and i-Motif Structures in the c-Myc Promoter: Implications for Drug Targeting and Control of Gene Expression
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- Non-B DNA conformations as determinants of mutagenesis and human disease
- (2009) Albino Bacolla et al. MOLECULAR CARCINOGENESIS
- Replisome stalling and stabilization at CGG repeats, which are responsible for chromosomal fragility
- (2009) Irina Voineagu et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Human genomic Z-DNA segments probed by the Zα domain of ADAR1
- (2009) Heng Li et al. NUCLEIC ACIDS RESEARCH
- Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells
- (2009) Anjali Verma et al. NUCLEIC ACIDS RESEARCH
- Single molecule measurement of the "speed limit" of DNA polymerase
- (2009) J. J. Schwartz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Real-Time DNA Sequencing from Single Polymerase Molecules
- (2008) J. Eid et al. SCIENCE
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