Microsatellite Tandem Repeats Are Abundant in Human Promoters and Are Associated with Regulatory Elements

Measuring Microsatellite Conservation in Mammalian Evolution with a Phylogenetic Birth–Death Model

(2012) Sterling M. Sawaya et al.   Genome Biology and Evolution

Tandem repeat sequence variation as causative Cis-eQTLs for protein-coding gene expression variation: The case of CSTB

(2012) Christelle Borel et al.   HUMAN MUTATION

A direct characterization of human mutation based on microsatellites

(2012) James X Sun et al.   NATURE GENETICS

Quadruplex-single nucleotide polymorphisms (Quad-SNP) influence gene expression difference among individuals

(2012) Aradhita Baral et al.   NUCLEIC ACIDS RESEARCH

Association between a polymorphism in the promoter of a glutamate receptor subunit gene (GRIN2A) and alcoholism

(2011) Marie-Charlotte Domart et al.   ADDICTION BIOLOGY

CpG islands and the regulation of transcription

(2011) A. M. Deaton et al.   GENES & DEVELOPMENT

A matter of life or death: How microsatellites emerge in and vanish from the human genome

(2011) Y. D. Kelkar et al.   GENOME RESEARCH

Evaluation of microsatellite variation in the 1000 Genomes Project pilot studies is indicative of the quality and utility of the raw data and alignments

(2011) L.J. McIver et al.   GENOMICS

NOS1 ex1f-VNTR polymorphism influences prefrontal brain oxygenation during a working memory task

(2011) Juliane Kopf et al.   NEUROIMAGE

G4 motifs correlate with promoter-proximal transcriptional pausing in human genes

(2011) J. Eddy et al.   NUCLEIC ACIDS RESEARCH

BioMart Central Portal: an open database network for the biological community

(2011) J. M. Guberman et al.   Database-The Journal of Biological Databases and Curation

Variable Tandem Repeats Accelerate Evolution of Coding and Regulatory Sequences

(2010) Rita Gemayel et al.   Annual Review of Genetics

Conservation of Human Microsatellites across 450 Million Years of Evolution

(2010) Emmanuel Buschiazzo et al.   Genome Biology and Evolution

A Genomic Portrait of Human Microsatellite Variation

(2010) B. A. Payseur et al.   MOLECULAR BIOLOGY AND EVOLUTION

Guanine quadruplex DNA structure restricts methylation of CpG dinucleotides genome-wide

(2010) Rashi Halder et al.   Molecular BioSystems

GREAT improves functional interpretation of cis-regulatory regions

(2010) Cory Y McLean et al.   NATURE BIOTECHNOLOGY

How long is too long? Effects of loop size on G-quadruplex stability

(2010) Aurore Guédin et al.   NUCLEIC ACIDS RESEARCH

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Influence of Functional Variant of Neuronal Nitric Oxide Synthase on Impulsive Behaviors in Humans

(2009) Andreas Reif et al.   ARCHIVES OF GENERAL PSYCHIATRY

The effect of a promoter polymorphism on the transcription of nitric oxide synthase 1 and its relevance to Parkinson's disease

(2009) Terrie Rife et al.   JOURNAL OF NEUROSCIENCE RESEARCH

Selection for the G4 DNA motif at the 5′ end of human genes

(2009) Johanna Eddy et al.   MOLECULAR CARCINOGENESIS

Genome-wide colonization of gene regulatory elements by G4 DNA motifs

(2009) Zhuo Du et al.   NUCLEIC ACIDS RESEARCH

Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells

(2009) Anjali Verma et al.   NUCLEIC ACIDS RESEARCH

Unstable Tandem Repeats in Promoters Confer Transcriptional Evolvability

(2009) M. D. Vinces et al.   SCIENCE

Tandem repeat polymorphisms: modulators of disease susceptibility and candidates for ‘missing heritability’

(2009) Anthony J. Hannan   TRENDS IN GENETICS

Structures, folding patterns, and functions of intramolecular DNA G-quadruplexes found in eukaryotic promoter regions

(2008) Yong Qin et al.   BIOCHIMIE

A unified approach to false discovery rate estimation

(2008) Korbinian Strimmer   BMC BIOINFORMATICS

Embryonic nervous system genes predominate in searches for dinucleotide simple sequence repeats flanked by conserved sequences

(2008) Donald E. Riley et al.   GENE

UTR dinucleotide simple sequence repeat evolution exhibits recurring patterns including regulatory sequence motif replacements

(2008) Donald E. Riley et al.   GENE

Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties

(2008) A. Bacolla et al.   GENOME RESEARCH

Genome-Wide Computational and Expression Analyses Reveal G-Quadruplex DNA Motifs as Conservedcis-Regulatory Elements in Human and Related Species

(2008) Anjali Verma et al.   JOURNAL OF MEDICINAL CHEMISTRY

Influence of a GT repeat element on shear stress responsiveness of the VWF gene promoter

(2008) C. HOUGH et al.   JOURNAL OF THROMBOSIS AND HAEMOSTASIS

The Relationship Between Microsatellite Polymorphism and Recombination Hot Spots in the Human Genome

(2008) M. Brandstrom et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome analysis of the platypus reveals unique signatures of evolution

(2008) Wesley C. Warren et al.   NATURE

The relationship of potential G-quadruplex sequences in cis-upstream regions of the human genome to SP1-binding elements

(2008) A. K. Todd et al.   NUCLEIC ACIDS RESEARCH

Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes

(2008) Johanna Eddy et al.   NUCLEIC ACIDS RESEARCH

Trinucleotide repeat variants in the promoter of the thiopurine S-methyltransferase gene of patients exhibiting ultra-high enzyme activity

(2008) Rebecca L. Roberts et al.   Pharmacogenetics and Genomics

Housekeeping and tissue-specific genes differ in simple sequence repeats in the 5′-UTR region

(2007) Mark J. Lawson et al.   GENE

Individual differences in allocation of funds in the dictator game associated with length of the arginine vasopressin 1a receptor RS3 promoter region and correlation between RS3 length and hippocampal mRNA

(2007) A. Knafo et al.   GENES BRAIN AND BEHAVIOR

Genome-wide analysis reveals regulatory role of G4 DNA in gene transcription

(2007) Z. Du et al.   GENOME RESEARCH

A novel variable number of tandem repeats (VNTR) polymorphism containing Sp1 binding elements in the promoter of XRCC5 is a risk factor for human bladder cancer

(2007) Shouyu Wang et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS