A checklist for maximizing reproducibility of ecological niche models
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Title
A checklist for maximizing reproducibility of ecological niche models
Authors
Keywords
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Journal
Nature Ecology & Evolution
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-09-24
DOI
10.1038/s41559-019-0972-5
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Note: Only part of the references are listed.- CoordinateCleaner: standardized cleaning of occurrence records from biological collection databases
- (2019) Alexander Zizka et al. Methods in Ecology and Evolution
- Standards for distribution models in biodiversity assessments
- (2019) Miguel B. Araújo et al. Science Advances
- kuenm: an R package for detailed development of ecological niche models using Maxent
- (2019) Marlon E. Cobos et al. PeerJ
- Species' range model metadata standards: RMMS
- (2019) Cory Merow et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- Collinearity in ecological niche modeling: Confusions and challenges
- (2019) Xiao Feng et al. Ecology and Evolution
- Ignoring seasonal changes in the ecological niche of non-migratory species may lead to biases in potential distribution models: lessons from bats
- (2018) Sonia Smeraldo et al. BIODIVERSITY AND CONSERVATION
- Finding the right fit: Comparative cetacean distribution models using multiple data sources and statistical approaches
- (2018) Solene Derville et al. DIVERSITY AND DISTRIBUTIONS
- Misleading prioritizations from modelling range shifts under climate change
- (2018) Helen R. Sofaer et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- Rapid range expansion of the Brazilian free-tailed bat in the southeastern United States, 2008–2016
- (2018) Gary F McCracken et al. JOURNAL OF MAMMALOGY
- Wallace : A flexible platform for reproducible modeling of species niches and distributions built for community expansion
- (2018) Jamie M. Kass et al. Methods in Ecology and Evolution
- Best practices for reporting climate data in ecology
- (2018) Naia Morueta-Holme et al. Nature Climate Change
- Species Distribution Modelling: Contrasting presence-only models with plot abundance data
- (2018) Vitor H. F. Gomes et al. Scientific Reports
- Genotypic variability enhances the reproducibility of an ecological study
- (2018) Alexandru Milcu et al. Nature Ecology & Evolution
- An evaluation of transferability of ecological niche models
- (2018) Huijie Qiao et al. ECOGRAPHY
- Estimating the population size of lemurs based on their mutualistic food trees
- (2018) James P. Herrera et al. JOURNAL OF BIOGEOGRAPHY
- Creating individual accessible area hypotheses improves stacked species distribution model performance
- (2017) Jacob C. Cooper et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- A global assessment of climatic niche shifts and human influence in insect invasions
- (2017) Matthew P. Hill et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas
- (2017) Stephen E. Fick et al. INTERNATIONAL JOURNAL OF CLIMATOLOGY
- A temporally explicit species distribution model for a long distance avian migrant, the common cuckoo
- (2017) Heather M. Williams et al. JOURNAL OF AVIAN BIOLOGY
- Beyond climate control on species range: The importance of soil data to predict distribution of Amazonian plant species
- (2017) Fernando O. G. Figueiredo et al. JOURNAL OF BIOGEOGRAPHY
- Applying species distribution modelling to a data poor, pelagic fish complex: the ocean sunfishes
- (2017) Natasha D. Phillips et al. JOURNAL OF BIOGEOGRAPHY
- A little bit everyday: range size determinants in Arachis (Fabaceae), a dispersal-limited group
- (2017) Guilherme Bordignon Ceolin et al. JOURNAL OF BIOGEOGRAPHY
- Rapid poleward distributional shifts in the European cave-dwelling Meta spiders under the influence of competition dynamics
- (2017) Stefano Mammola et al. JOURNAL OF BIOGEOGRAPHY
- Is evolution of apomicts driven by the phylogeography of the sexual ancestor? Insights from European and Caucasian brambles (Rubus , Rosaceae)
- (2017) Michal Sochor et al. JOURNAL OF BIOGEOGRAPHY
- Ecological diversification of the Australian Coptotermes termites and the evolution of mound building
- (2017) Timothy R. C. Lee et al. JOURNAL OF BIOGEOGRAPHY
- Implications and alternatives of assigning climate data to geographical centroids
- (2017) Daniel S. Park et al. JOURNAL OF BIOGEOGRAPHY
- Phylogeography of the dry vegetation endemic species Nephila sexpunctata (Araneae: Araneidae) suggests recent expansion of the Neotropical Dry Diagonal
- (2017) Luiz Filipe de Macedo Bartoleti et al. JOURNAL OF BIOGEOGRAPHY
- The importance of temporal resolution for niche modelling in dynamic marine environments
- (2017) Marc Fernandez et al. JOURNAL OF BIOGEOGRAPHY
- Does the jack of all trades fare best? Survival and niche width in Late Pleistocene megafauna
- (2017) Mirko Di Febbraro et al. JOURNAL OF BIOGEOGRAPHY
- The origin and phylogenetic relationships of the New Zealand ravens
- (2017) R. Paul Scofield et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Best practices in data analysis and sharing in neuroimaging using MRI
- (2017) Thomas E Nichols et al. NATURE NEUROSCIENCE
- Widespread sampling biases in herbaria revealed from large-scale digitization
- (2017) Barnabas H. Daru et al. NEW PHYTOLOGIST
- Accessible areas in ecological niche comparisons of invasive species: Recognized but still overlooked
- (2017) Huijie Qiao et al. Scientific Reports
- Would Ecology Fail the Repeatability Test?
- (2016) Stefan A. Schnitzer et al. BIOSCIENCE
- A single-algorithm ensemble approach to estimating suitability and uncertainty: cross-time projections for four Malagasy tenrecs
- (2016) Robert A. Boria et al. DIVERSITY AND DISTRIBUTIONS
- Biogeo: an R package for assessing and improving data quality of occurrence record datasets
- (2016) Mark P. Robertson et al. ECOGRAPHY
- NicheA: creating virtual species and ecological niches in multivariate environmental scenarios
- (2016) Huijie Qiao et al. ECOGRAPHY
- Towards a more reproducible ecology
- (2016) Michael Krabbe Borregaard et al. ECOGRAPHY
- Multidimensional biases, gaps and uncertainties in global plant occurrence information
- (2016) Carsten Meyer et al. ECOLOGY LETTERS
- Big data for forecasting the impacts of global change on plant communities
- (2016) Janet Franklin et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- Improving niche and range estimates with Maxent and point process models by integrating spatially explicit information
- (2016) Cory Merow et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- Selecting predictors to maximize the transferability of species distribution models: lessons from cross-continental plant invasions
- (2016) Blaise Petitpierre et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- Demographic structure and genetic variability throughout the distribution of Platte thistle (Cirsium canescens Asteraceae)
- (2016) Robby L. McMinn et al. JOURNAL OF BIOGEOGRAPHY
- 1,500 scientists lift the lid on reproducibility
- (2016) Monya Baker NATURE
- geoknife: reproducible web-processing of large gridded datasets
- (2015) Jordan S. Read et al. ECOGRAPHY
- spThin: an R package for spatial thinning of species occurrence records for use in ecological niche models
- (2015) Matthew E. Aiello-Lammens et al. ECOGRAPHY
- Impact of model complexity on cross-temporal transferability in Maxent species distribution models: An assessment using paleobotanical data
- (2015) Elena Moreno-Amat et al. ECOLOGICAL MODELLING
- A framework for species distribution modelling with improved pseudo-absence generation
- (2015) Maialen Iturbide et al. ECOLOGICAL MODELLING
- A reciprocal test of Darwin's naturalization hypothesis in two mediterranean-climate regions
- (2015) Daniel S. Park et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- Is my species distribution model fit for purpose? Matching data and models to applications
- (2015) Gurutzeta Guillera-Arroita et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- Novel competitors shape species’ responses to climate change
- (2015) Jake M. Alexander et al. NATURE
- Reassessment of the hairy long-nosed armadillo “Dasypus” pilosus (Xenarthra, Dasypodidae) and revalidation of the genus Cryptophractus Fitzinger, 1856
- (2015) MARIELA C. CASTRO et al. ZOOTAXA
- No silver bullets in correlative ecological niche modelling: insights from testing among many potential algorithms for niche estimation
- (2015) Huijie Qiao et al. Methods in Ecology and Evolution
- On the selection of thresholds for predicting species occurrence with presence-only data
- (2015) Canran Liu et al. Ecology and Evolution
- Assessment of climatically suitable area for Syrmaticus reevesii under climate change
- (2015) X Feng et al. Endangered Species Research
- Using district-level occurrences in MaxEnt for predicting the invasion potential of an exotic insect pest in India
- (2014) Sunil Kumar et al. COMPUTERS AND ELECTRONICS IN AGRICULTURE
- Field validation shows bias-corrected pseudo-absence selection is the best method for predictive species-distribution modelling
- (2014) Lionel R. Hertzog et al. DIVERSITY AND DISTRIBUTIONS
- Spatial filtering to reduce sampling bias can improve the performance of ecological niche models
- (2014) Robert A. Boria et al. ECOLOGICAL MODELLING
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- (2014) Narayani Barve et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- The effect of spatially marginal localities in modelling species niches and distributions
- (2014) Mariano Soley-Guardia et al. JOURNAL OF BIOGEOGRAPHY
- Ecological niche modelling confirms potential north-east range expansion of the nine-banded armadillo (Dasypus novemcinctus) in the USA
- (2014) Xiao Feng et al. JOURNAL OF BIOGEOGRAPHY
- Range expansion and distributional limits of the nine-banded armadillo in the United States: an update of Taulman & Robbins (1996)
- (2014) James F. Taulman et al. JOURNAL OF BIOGEOGRAPHY
- Mapping Species Distributions with MAXENT Using a Geographically Biased Sample of Presence Data: A Performance Assessment of Methods for Correcting Sampling Bias
- (2014) Yoan Fourcade et al. PLoS One
- ENMeval: An R package for conducting spatially independent evaluations and estimating optimal model complexity forMaxentecological niche models
- (2014) Robert Muscarella et al. Methods in Ecology and Evolution
- Best Practices for Scientific Computing
- (2014) Greg Wilson et al. PLOS BIOLOGY
- Equivalence of MAXENT and Poisson Point Process Models for Species Distribution Modeling in Ecology
- (2013) Ian W. Renner et al. BIOMETRICS
- The taxonomic name resolution service: an online tool for automated standardization of plant names
- (2013) Brad Boyle et al. BMC BIOINFORMATICS
- A practical guide to MaxEnt for modeling species’ distributions: what it does, and why inputs and settings matter
- (2013) Cory Merow et al. ECOGRAPHY
- Selecting from correlated climate variables: a major source of uncertainty for predicting species distributions under climate change
- (2013) Veronika Braunisch et al. ECOGRAPHY
- Constraints on interpretation of ecological niche models by limited environmental ranges on calibration areas
- (2013) Hannah L. Owens et al. ECOLOGICAL MODELLING
- Big data and the future of ecology
- (2013) Stephanie E Hampton et al. FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
- Should species distribution models account for spatial autocorrelation? A test of model projections across eight millennia of climate change
- (2013) Sydne Record et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- Selecting thresholds for the prediction of species occurrence with presence-only data
- (2013) Canran Liu et al. JOURNAL OF BIOGEOGRAPHY
- Species Distribution Modeling and Ecological Niche Modeling: Getting the Concepts Right
- (2013) A. Townsend Peterson et al. Natureza & Conservacao
- Novel Three-Step Pseudo-Absence Selection Technique for Improved Species Distribution Modelling
- (2013) Senait D. Senay et al. PLoS One
- Prevalence, thresholds and the performance of presence-absence models
- (2013) Callum R. Lawson et al. Methods in Ecology and Evolution
- The role of biotic interactions in shaping distributions and realised assemblages of species: implications for species distribution modelling
- (2012) Mary Susanne Wisz et al. BIOLOGICAL REVIEWS
- Predicting to new environments: tools for visualizing model behaviour and impacts on mapped distributions
- (2012) Damaris Zurell et al. DIVERSITY AND DISTRIBUTIONS
- Collinearity: a review of methods to deal with it and a simulation study evaluating their performance
- (2012) Carsten F. Dormann et al. ECOGRAPHY
- Variation in niche and distribution model performance: The need for a priori assessment of key causal factors
- (2012) E.E. Saupe et al. ECOLOGICAL MODELLING
- The sensitivity of species distribution modeling to scale differences
- (2012) Wonkyong Song et al. ECOLOGICAL MODELLING
- Cross-validation of species distribution models: removing spatial sorting bias and calibration with a null model
- (2012) Robert J. Hijmans ECOLOGY
- Lost locations and the (ir)repeatability of ecological studies
- (2012) Julie Teresa Shapiro et al. FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
- Delimiting the geographical background in species distribution modelling
- (2012) Pelayo Acevedo et al. JOURNAL OF BIOGEOGRAPHY
- Raise standards for preclinical cancer research
- (2012) C. Glenn Begley et al. NATURE
- Next-generation sequencing data interpretation: enhancing reproducibility and accessibility
- (2012) Anton Nekrutenko et al. NATURE REVIEWS GENETICS
- Testing the predictive performance of distribution models
- (2012) Volker Bahn et al. OIKOS
- Darwin Core: An Evolving Community-Developed Biodiversity Data Standard
- (2012) John Wieczorek et al. PLoS One
- Present and Potential Future Distribution of Common Vampire Bats in the Americas and the Associated Risk to Cattle
- (2012) Dana N. Lee et al. PLoS One
- Identifying appropriate spatial scales of predictors in species distribution models with the random forest algorithm
- (2012) Ute Bradter et al. Methods in Ecology and Evolution
- Likelihood analysis of species occurrence probability from presence-only data for modelling species distributions
- (2012) J. Andrew Royle et al. Methods in Ecology and Evolution
- Selecting pseudo-absences for species distribution models: how, where and how many?
- (2012) Morgane Barbet-Massin et al. Methods in Ecology and Evolution
- Thermal tolerance and the global redistribution of animals
- (2012) Jennifer M. Sunday et al. Nature Climate Change
- Participatory design of DataONE—Enabling cyberinfrastructure for the biological and environmental sciences
- (2011) William K. Michener et al. Ecological Informatics
- The crucial role of the accessible area in ecological niche modeling and species distribution modeling
- (2011) Narayani Barve et al. ECOLOGICAL MODELLING
- Species-specific tuning increases robustness to sampling bias in models of species distributions: An implementation with Maxent
- (2011) Robert P. Anderson et al. ECOLOGICAL MODELLING
- Reliability of 'new drug target' claims called into question
- (2011) Asher Mullard NATURE REVIEWS DRUG DISCOVERY
- The Influence of Late Quaternary Climate-Change Velocity on Species Endemism
- (2011) B. Sandel et al. SCIENCE
- Integrating biodiversity distribution knowledge: toward a global map of life
- (2011) Walter Jetz et al. TRENDS IN ECOLOGY & EVOLUTION
- Poisson point process models solve the “pseudo-absence problem” for presence-only data in ecology
- (2010) David I. Warton et al. Annals of Applied Statistics
- A statistical explanation of MaxEnt for ecologists
- (2010) Jane Elith et al. DIVERSITY AND DISTRIBUTIONS
- Measuring and comparing the accuracy of species distribution models with presence-absence data
- (2010) Canran Liu et al. ECOGRAPHY
- Ecological niche modeling in Maxent: the importance of model complexity and the performance of model selection criteria
- (2010) Dan L. Warren et al. ECOLOGICAL APPLICATIONS
- An overview of recent remote sensing and GIS based research in ecological informatics
- (2010) D.S. Boyd et al. Ecological Informatics
- The interpretation of habitat preference metrics under use-availability designs
- (2010) H. L. Beyer et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Matters of Scale
- (2010) B. J. McGill SCIENCE
- The art of modelling range-shifting species
- (2010) Jane Elith et al. Methods in Ecology and Evolution
- Citizen Science: A Developing Tool for Expanding Science Knowledge and Scientific Literacy
- (2009) Rick Bonney et al. BIOSCIENCE
- Do they? How do they? WHY do they differ? On finding reasons for differing performances of species distribution models
- (2009) Jane Elith et al. ECOGRAPHY
- Sample selection bias and presence-only distribution models: implications for background and pseudo-absence data
- (2009) Steven J. Phillips et al. ECOLOGICAL APPLICATIONS
- Selecting pseudo-absence data for presence-only distribution modeling: How far should you stray from what you know?
- (2009) Jeremy VanDerWal et al. ECOLOGICAL MODELLING
- Hierarchical models facilitate spatial analysis of large data sets: a case study on invasive plant species in the northeastern United States
- (2009) A. M. Latimer et al. ECOLOGY LETTERS
- Niches and distributional areas: Concepts, methods, and assumptions
- (2009) J. Soberon et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation
- (2008) Steven J. Phillips et al. ECOGRAPHY
- Rethinking receiver operating characteristic analysis applications in ecological niche modeling
- (2008) A. Townsend Peterson et al. ECOLOGICAL MODELLING
- A working guide to boosted regression trees
- (2008) J. Elith et al. JOURNAL OF ANIMAL ECOLOGY
- Historical bias in biodiversity inventories affects the observed environmental niche of the species
- (2008) Joaquín Hortal et al. OIKOS
- AUC: a misleading measure of the performance of predictive distribution models
- (2007) Jorge M. Lobo et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
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