Development and characterization of acidic-pH-tolerant mutants of Zymomonas mobilis through adaptation and next-generation sequencing-based genome resequencing and RNA-Seq

Engineered Zymomonas mobilis tolerant to acetic acid and low pH via multiplex atmospheric and room temperature plasma mutagenesis

(2019) Bo Wu et al.   Biotechnology for Biofuels

Prediction and characterization of promoters and ribosomal binding sites of Zymomonas mobilis in system biology era

(2019) Yongfu Yang et al.   Biotechnology for Biofuels

2H and 13C metabolic flux analysis elucidates in vivo thermodynamics of the ED pathway in Zymomonas mobilis

(2019) Tyler B. Jacobson et al.   METABOLIC ENGINEERING

Microbial response to acid stress: mechanisms and applications

(2019) Ningzi Guan et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Inorganic Polyphosphates As Storage for and Generator of Metabolic Energy in the Extracellular Matrix

(2019) Werner E.G. Müller et al.   CHEMICAL REVIEWS

Metabolic Engineering of Bacterial Respiration: High vs. Low P/O and the Case of Zymomonas mobilis

(2019) Uldis Kalnenieks et al.   Frontiers in Bioengineering and Biotechnology

Furfural-tolerant Zymomonas mobilis derived from error-prone PCR-based whole genome shuffling and their tolerant mechanism

(2018) Suzhen Huang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Low-pH production of d -lactic acid using newly isolated acid tolerant yeast Pichia kudriavzevii NG7

(2018) Hyun Joo Park et al.   BIOTECHNOLOGY AND BIOENGINEERING

Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032

(2018) Shihui Yang et al.   Biotechnology for Biofuels

Mutations in Escherichia coli Polyphosphate Kinase That Lead to Dramatically Increased In Vivo Polyphosphate Levels

(2018) Amanda K. Rudat et al.   JOURNAL OF BACTERIOLOGY

Advances and prospects in metabolic engineering of Zymomonas mobilis

(2018) Xia Wang et al.   METABOLIC ENGINEERING

Adaptive laboratory evolution resolves energy depletion to maintain high aromatic metabolite phenotypes in Escherichia coli strains lacking the Phosphotransferase System

(2018) Douglas McCloskey et al.   METABOLIC ENGINEERING

Bioethanol production under multiple stress condition by a new acid and temperature tolerant Saccharomyces cerevisiae strain LC 269108 isolated from rotten fruits

(2018) Charles O. Nwuche et al.   PROCESS BIOCHEMISTRY

Oleaginicity of the yeast strain Saccharomyces cerevisiae D5A

(2018) Qiaoning He et al.   Biotechnology for Biofuels

Adipic acid tolerance screening for potential adipic acid production hosts

(2017) Emma Karlsson et al.   Microbial Cell Factories

Impact and significance of microbial contamination during fermentation for bioethanol production

(2017) Ramon Peres Brexó et al.   RENEWABLE & SUSTAINABLE ENERGY REVIEWS

Omics analysis of acetic acid tolerance in Saccharomyces cerevisiae

(2017) Peng Geng et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Generation and Characterization of Acid Tolerant Fibrobacter succinogenes S85

(2017) Chia-wei Wu et al.   Scientific Reports

Trypanosoma brucei TbIF1 inhibits the essential F1-ATPase in the infectious form of the parasite

(2017) Brian Panicucci et al.   PLoS Neglected Tropical Diseases

A new laboratory evolution approach to select for constitutive acetic acid tolerance in Saccharomyces cerevisiae and identification of causal mutations

(2016) Daniel González-Ramos et al.   Biotechnology for Biofuels

Metabolic engineering of Zymomonas mobilis for 2,3-butanediol production from lignocellulosic biomass sugars

(2016) Shihui Yang et al.   Biotechnology for Biofuels

Long-term adaptive evolution of Leuconostoc mesenteroides for enhancement of lactic acid tolerance and production

(2016) Si Yeon Ju et al.   Biotechnology for Biofuels

Tailoring of global transcription sigma D factor by random mutagenesis to improve Escherichia coli tolerance towards low-pHs

(2016) Xi Gao et al.   JOURNAL OF BIOTECHNOLOGY

Fuel ethanol production from lignocellulosic biomass: An overview on feedstocks and technological approaches

(2016) H. Zabed et al.   RENEWABLE & SUSTAINABLE ENERGY REVIEWS

Zymomonas mobilis as a model system for production of biofuels and biochemicals

(2016) Shihui Yang et al.   Microbial Biotechnology

Identification and Characterization of a Novel Issatchenkia orientalis GPI-Anchored Protein, IoGas1, Required for Resistance to Low pH and Salt Stress

(2016) Akinori Matsushika et al.   PLoS One

Adaptive laboratory evolution of ethanologenic Zymomonas mobilis strain tolerant to furfural and acetic acid inhibitors

(2015) Zong-Xia Shui et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Mechanisms of acid tolerance in bacteria and prospects in biotechnology and bioremediation

(2015) Yuping Liu et al.   BIOTECHNOLOGY ADVANCES

High-throughput sequencing reveals adaptation-induced mutations in pentose-fermenting strains ofZymomonas mobilis

(2015) Kori L. Dunn et al.   BIOTECHNOLOGY AND BIOENGINEERING

Transcriptome analysis of Zymomonas mobilis ZM4 reveals mechanisms of tolerance and detoxification of phenolic aldehyde inhibitors from lignocellulose pretreatment

(2015) Xia Yi et al.   Biotechnology for Biofuels

Tolerance and adaptive evolution of triacylglycerol-producing Rhodococcus opacus to lignocellulose-derived inhibitors

(2015) Kazuhiko Kurosawa et al.   Biotechnology for Biofuels

Improving a recombinant Zymomonas mobilis strain 8b through continuous adaptation on dilute acid pretreated corn stover hydrolysate

(2015) Ali Mohagheghi et al.   Biotechnology for Biofuels

Effect of Initial PH on Growth Characteristics and Fermentation Properties ofSaccharomyces cerevisiae

(2015) Xingyan Liu et al.   JOURNAL OF FOOD SCIENCE

N2gas is an effective fertilizer for bioethanol production byZymomonas mobilis

(2015) Timothy A. Kremer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Use of Adaptive Laboratory Evolution To Discover Key Mutations Enabling Rapid Growth of Escherichia coli K-12 MG1655 on Glucose Minimal Medium

(2014) Ryan A. LaCroix et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Adaptive Evolution of Saccharomyces cerevisiae with Enhanced Ethanol Tolerance for Chinese Rice Wine Fermentation

(2014) Shuang Chen et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Bacterial multidrug efflux pumps: Mechanisms, physiology and pharmacological exploitations

(2014) Jingjing Sun et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Improving xylose utilization by recombinant Zymomonas mobilis strain 8b through adaptation using 2-deoxyglucose

(2014) Ali Mohagheghi et al.   Biotechnology for Biofuels

Insights into acetate toxicity in Zymomonas mobilis8b using different substrates

(2014) Shihui Yang et al.   Biotechnology for Biofuels

The inefficient aerobic energetics ofZymomonas mobilis: Identifying the bottleneck

(2014) Reinis Rutkis et al.   JOURNAL OF BASIC MICROBIOLOGY

Sorbitol required for cell growth and ethanol production by Zymomonas mobilis under heat, ethanol, and osmotic stresses

(2013) Kaewta Sootsuwan et al.   Biotechnology for Biofuels

RND Efflux Pumps: Structural Information Translated into Function and Inhibition Mechanisms

(2013) Paolo Ruggerone et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Regulators of oxidative stress response genes in Escherichia coli and their functional conservation in bacteria

(2012) Sarah M. Chiang et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Improved ethanol production by a xylose-fermenting recombinant yeast strain constructed through a modified genome shuffling method

(2012) Wei Zhang et al.   Biotechnology for Biofuels

Transcriptome profiling of Zymomonas mobilis under ethanol stress

(2012) Ming-xiong He et al.   Biotechnology for Biofuels

Molecular aspects of bacterial pH sensing and homeostasis

(2011) Terry A. Krulwich et al.   NATURE REVIEWS MICROBIOLOGY

Adaptation yields a highly efficient xylose-fermenting Zymomonas mobilis strain

(2010) Manoj Agrawal et al.   BIOTECHNOLOGY AND BIOENGINEERING

Ethanol production from mixtures of wheat straw and wheat meal

(2010) Borbála Erdei et al.   Biotechnology for Biofuels

The Zymomonas mobilis regulator hfq contributes to tolerance against multiple lignocellulosic pretreatment inhibitors

(2010) Shihui Yang et al.   BMC MICROBIOLOGY

Acid tolerance mechanisms utilized byStreptococcus mutans

(2010) Robert Matsui et al.   Future Microbiology

Adaptive Response and Tolerance to Weak Acids in Saccharomyces cerevisiae: A Genome-Wide View

(2010) Nuno P. Mira et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Polyphosphate Kinase from M. tuberculosis: An Interconnect between the Genetic and Biochemical Role

(2010) Vijayalakshmi Jagannathan et al.   PLoS One

Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae

(2010) S. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cellulosic hydrolysate toxicity and tolerance mechanisms in Escherichia coli

(2009) Tirzah Y Mills et al.   Biotechnology for Biofuels

Structure, function and inhibition of RND efflux pumps in Gram-negative bacteria: an update

(2009) Jessica MA Blair et al.   CURRENT OPINION IN MICROBIOLOGY

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

Role of Polyphosphates in Microbial Adaptation to Extreme Environments

(2008) M. J. Seufferheld et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mechanisms of RND multidrug efflux pumps

(2008) Hiroshi Nikaido et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Progress in bioethanol processing

(2008) Mustafa Balat et al.   PROGRESS IN ENERGY AND COMBUSTION SCIENCE

The utilization of acid-tolerant bacteria on ethanol production from kitchen garbage

(2008) Hongzhi Ma et al.   RENEWABLE ENERGY