Prediction and characterization of promoters and ribosomal binding sites of Zymomonas mobilis in system biology era

Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032

(2018) Shihui Yang et al.   Biotechnology for Biofuels

Improving cellulosic ethanol fermentability of Zymomonas mobilis by overexpression of sodium ion tolerance gene ZMO0119

(2018) Xiaochuang Gao et al.   JOURNAL OF BIOTECHNOLOGY

Advances and prospects in metabolic engineering of Zymomonas mobilis

(2018) Xia Wang et al.   METABOLIC ENGINEERING

Engineered promoters enable constant gene expression at any copy number in bacteria

(2018) Thomas H Segall-Shapiro et al.   NATURE BIOTECHNOLOGY

Reprogramming Yeast Metabolism from Alcoholic Fermentation to Lipogenesis

(2018) Tao Yu et al.   CELL

Obtaining a Panel of Cascade Promoter-5′-UTR Complexes in Escherichia coli

(2017) Shenghu Zhou et al.   ACS Synthetic Biology

Rapid Generation of Universal Synthetic Promoters for Controlled Gene Expression in Both Gas-Fermenting and Saccharolytic Clostridium Species

(2017) Gaohua Yang et al.   ACS Synthetic Biology

Identification and Characterization of 5′ Untranslated Regions (5′UTRs) in Zymomonas mobilis as Regulatory Biological Parts

(2017) Seung Hee Cho et al.   Frontiers in Microbiology

Metabolic engineering of Zymomonas mobilis for 2,3-butanediol production from lignocellulosic biomass sugars

(2016) Shihui Yang et al.   Biotechnology for Biofuels

High-level expression and characterization of a novel serine protease in Pichia pastoris by multi-copy integration

(2016) Min Shu et al.   ENZYME AND MICROBIAL TECHNOLOGY

Characterization of Intrinsic Properties of Promoters

(2016) Timothy J. Rudge et al.   ACS Synthetic Biology

Zymomonas mobilis as a model system for production of biofuels and biochemicals

(2016) Shihui Yang et al.   Microbial Biotechnology

Transcriptional analysis of adaptation to high glucose concentrations in Zymomonas mobilis

(2015) Kun Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Functional characterization of a new promoter isolated from torque teno sus virus 1

(2015) Jianbo Liu et al.   ARCHIVES OF VIROLOGY

High-throughput sequencing reveals adaptation-induced mutations in pentose-fermenting strains ofZymomonas mobilis

(2015) Kori L. Dunn et al.   BIOTECHNOLOGY AND BIOENGINEERING

Transcriptome analysis of Zymomonas mobilis ZM4 reveals mechanisms of tolerance and detoxification of phenolic aldehyde inhibitors from lignocellulose pretreatment

(2015) Xia Yi et al.   Biotechnology for Biofuels

Discovery of Ethanol-Responsive Small RNAs in Zymomonas mobilis

(2014) Seung Hee Cho et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Insights into acetate toxicity in Zymomonas mobilis8b using different substrates

(2014) Shihui Yang et al.   Biotechnology for Biofuels

Towards an Informative Mutant Phenotype for Every Bacterial Gene

(2014) A. Deutschbauer et al.   JOURNAL OF BACTERIOLOGY

Dissecting a complex chemical stress: chemogenomic profiling of plant hydrolysates

(2013) J. M. Skerker et al.   Molecular Systems Biology

Systems Biology Analysis of Zymomonas mobilis ZM4 Ethanol Stress Responses

(2013) Shihui Yang et al.   PLoS One

Transcriptome profiling of Zymomonas mobilis under furfural stress

(2012) Ming-xiong He et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Genome-wide transcriptomic analysis of a flocculent strain of Zymomonas mobilis

(2012) Young Jae Jeon et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Transcriptome profiling of Zymomonas mobilis under ethanol stress

(2012) Ming-xiong He et al.   Biotechnology for Biofuels

Flow cytometry of fluorescent proteins

(2012) William G. Telford et al.   METHODS

Genome-scale modeling and in silico analysis of ethanologenic bacteria Zymomonas mobilis

(2010) Hanifah Widiastuti et al.   BIOTECHNOLOGY AND BIOENGINEERING

Fluorescent proteins at a glance

(2010) G.-J. Kremers et al.   JOURNAL OF CELL SCIENCE

Synthetic biology: applications come of age

(2010) Ahmad S. Khalil et al.   NATURE REVIEWS GENETICS

Fluorescent Proteins and Their Applications in Imaging Living Cells and Tissues

(2010) Dmitriy M. Chudakov et al.   PHYSIOLOGICAL REVIEWS

Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae

(2010) S. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects

(2009) Francis Repoila et al.   BIOLOGY OF THE CELL

Analysis of stochasticity in promoter activation by using a dual-fluorescence reporter system

(2009) Jianhong Ou et al.   BIOSYSTEMS

Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations

(2009) Shihui Yang et al.   BMC GENOMICS

Improved genome annotation for Zymomonas mobilis

(2009) Shihui Yang et al.   NATURE BIOTECHNOLOGY

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

Characterization of Transcription from TATA-Less Promoters: Identification of a New Core Promoter Element XCPE2 and Analysis of Factor Requirements

(2009) Ramakrishnan Anish et al.   PLoS One

DOOR: a database for prokaryotic operons

(2008) Fenglou Mao et al.   NUCLEIC ACIDS RESEARCH