Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method

The plant MBF1 protein family: a bridge between stress and transcription

(2020) Fabiola Jaimes-Miranda et al.   JOURNAL OF EXPERIMENTAL BOTANY

Purification of cross-linked RNA-protein complexes by phenol-toluol extraction

(2019) Erika C. Urdaneta et al.   Nature Communications

System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection

(2019) Manuel Garcia-Moreno et al.   MOLECULAR CELL

The Small Non-coding Vault RNA1-1 Acts as a Riboregulator of Autophagy

(2019) Rastislav Horos et al.   CELL

Changes in the Arabidopsis RNA-binding proteome reveal novel stress response mechanisms

(2019) Claudius Marondedze et al.   BMC PLANT BIOLOGY

The mRNA-bound proteome of Leishmania mexicana: novel genetic insight into an ancient parasite

(2019) Luis M. De Pablos et al.   MOLECULAR & CELLULAR PROTEOMICS

CLIP and RNA interactome studies to unravel genome-wide RNA-protein interactions in vivo in Arabidopsis thaliana

(2019) Tino Köster et al.   METHODS

Mbf1 ensures Polycomb silencing by protecting E(z) mRNA from degradation by Pacman

(2018) Kenichi Nishioka et al.   DEVELOPMENT

A brave new world of RNA-binding proteins

(2018) Matthias W. Hentze et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The DYW Domains of Pentatricopeptide Repeat RNA Editing Factors Contribute to Discriminate Target and Non-Target Editing Sites

(2018) Mizuho Ichinose et al.   PLANT AND CELL PHYSIOLOGY

Structure and Function of the Photosystem Supercomplexes

(2018) Jinlan Gao et al.   Frontiers in Plant Science

YTH Domain: A Family of N 6 -methyladenosine (m 6 A) Readers

(2018) Shanhui Liao et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest

(2018) Jakob Trendel et al.   CELL

Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture

(2018) Joel I. Perez-Perri et al.   Nature Communications

Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transition

(2017) Vladimir Despic et al.   GENOME RESEARCH

RNA interactome capture in yeast

(2017) Benedikt M. Beckmann   METHODS

Plant RNA Interactome Capture: Revealing the Plant RBPome

(2017) Marcel Bach-Pages et al.   TRENDS IN PLANT SCIENCE

mRNA Interactome Capture from Plant Protoplasts

(2017) Zhicheng Zhang et al.   Jove-Journal of Visualized Experiments

Comprehensive Identification of mRNA-Binding Proteins of Leishmania donovani by Interactome Capture

(2017) Devki Nandan et al.   PLoS One

The new (dis)order in RNA regulation

(2016) Aino I. Järvelin et al.   Cell Communication and Signaling

The mRNA-bound proteome of the early fly embryo

(2016) Hans-Hermann Wessels et al.   GENOME RESEARCH

Identification of RNA-binding Proteins in Macrophages by Interactome Capture

(2016) Anke Liepelt et al.   MOLECULAR & CELLULAR PROTEOMICS

Comprehensive Identification of RNA-Binding Domains in Human Cells

(2016) Alfredo Castello et al.   MOLECULAR CELL

Gene expression regulatory networks inTrypanosoma brucei: insights into the role of the mRNA-binding proteome

(2016) Smiths Lueong et al.   MOLECULAR MICROBIOLOGY

RNAi in Plants: An Argonaute-Centered View

(2016) Xiaofeng Fang et al.   PLANT CELL

In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings

(2016) Marlene Reichel et al.   PLANT CELL

UV crosslinked mRNA-binding proteins captured from leaf mesophyll protoplasts

(2016) Zhicheng Zhang et al.   Plant Methods

An overview of technical considerations for Western blotting applications to physiological research

(2016) J. J. Bass et al.   SCANDINAVIAN JOURNAL OF MEDICINE & SCIENCE IN SPORTS

Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila

(2016) Vasiliy O. Sysoev et al.   Nature Communications

Serial interactome capture of the human cell nucleus

(2016) Thomas Conrad et al.   Nature Communications

The Cardiomyocyte RNA-Binding Proteome: Links to Intermediary Metabolism and Heart Disease

(2016) Yalin Liao et al.   Cell Reports

The RNA-binding protein repertoire of Arabidopsis thaliana

(2016) Claudius Marondedze et al.   Scientific Reports

Conserved mRNA-binding proteomes in eukaryotic organisms

(2015) Ana M Matia-González et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Metabolic Enzymes Enjoying New Partnerships as RNA-Binding Proteins

(2015) Alfredo Castello et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs

(2015) Benedikt M. Beckmann et al.   Nature Communications

Conserved mRNA-binding proteomes in eukaryotic organisms

(2015) Ana M Matia-González et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Label-Free Protein-RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression

(2015) Jorge Boucas et al.   PLoS One

Pentatricopeptide Repeat Proteins in Plants

(2014) Alice Barkan et al.   Annual Review of Plant Biology

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins

(2014) Katharina Kramer et al.   NATURE METHODS

The cytidine deaminase signature HxE(x)nCxxC of DYW1 binds zinc and is necessary for RNA editing ofndhD-1

(2014) Clément Boussardon et al.   NEW PHYTOLOGIST

Genome-Wide Identification, Biochemical Characterization, and Expression Analyses of the YTH Domain-Containing RNA-Binding Protein Family in Arabidopsis and Rice

(2014) Dayong Li et al.   PLANT MOLECULAR BIOLOGY REPORTER

Posttranscriptional Control of T Cell Effector Function by Aerobic Glycolysis

(2013) Chih-Hao Chang et al.   CELL

Quantitative proteomic analysis reveals concurrent RNA-protein interactions and identifies new RNA-binding proteins in Saccharomyces cerevisiae

(2013) D. M. Klass et al.   GENOME RESEARCH

System-wide identification of RNA-binding proteins by interactome capture

(2013) Alfredo Castello et al.   Nature Protocols

The RNA-binding protein repertoire of embryonic stem cells

(2013) S Chul Kwon et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Genomic era analyses of RNA secondary structure and RNA-binding proteins reveal their significance to post-transcriptional regulation in plants

(2013) Ian M. Silverman et al.   PLANT SCIENCE

Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins

(2012) Alfredo Castello et al.   CELL

The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts

(2012) Alexander G. Baltz et al.   MOLECULAR CELL

Global analysis of yeast mRNPs

(2012) Sarah F Mitchell et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Proteome-Wide Search Reveals Unexpected RNA-Binding Proteins in Saccharomyces cerevisiae

(2010) Nikoleta G. Tsvetanova et al.   PLoS One

A Screen for RNA-Binding Proteins in Yeast Indicates Dual Functions for Many Enzymes

(2010) Tanja Scherrer et al.   PLoS One

How Common Are Extraribosomal Functions of Ribosomal Proteins?

(2009) Jonathan R. Warner et al.   MOLECULAR CELL

Unbiased RNA-protein interaction screen by quantitative proteomics

(2009) F. Butter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The functional duality of iron regulatory protein 1

(2008) Karl Volz   CURRENT OPINION IN STRUCTURAL BIOLOGY

Ribosomal position and contacts of mRNA in eukaryotic translation initiation complexes

(2008) Andrey V Pisarev et al.   EMBO JOURNAL

RNA-binding proteins and post-transcriptional gene regulation

(2008) Tina Glisovic et al.   FEBS LETTERS

On the Expansion of the Pentatricopeptide Repeat Gene Family in Plants

(2008) N. O'Toole et al.   MOLECULAR BIOLOGY AND EVOLUTION