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Title
Global Distribution and Evolution of Mycobacterium bovis Lineages
Authors
Keywords
-
Journal
Frontiers in Microbiology
Volume 11, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2020-05-07
DOI
10.3389/fmicb.2020.00843
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Note: Only part of the references are listed.- Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development
- (2019) Sònia Borrell et al. PLoS One
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- (2019) Mary B O'Neill et al. MOLECULAR ECOLOGY
- TreeCluster: Clustering biological sequences using phylogenetic trees
- (2019) Metin Balaban et al. PLoS One
- Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity
- (2018) Fabrizio Menardo et al. BMC BIOINFORMATICS
- Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates
- (2018) Moira Lasserre et al. BMC GENOMICS
- Phylogenomic analysis of the species of the Mycobacterium tuberculosis complex demonstrates that Mycobacterium africanum, Mycobacterium bovis, Mycobacterium caprae, Mycobacterium microti and Mycobacterium pinnipedii are later heterotypic synonyms of Mycobacterium tuberculosis
- (2018) Marco A. Riojas et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
- (2018) Andrew Rambaut et al. SYSTEMATIC BIOLOGY
- Genetic profiling of Mycobacterium bovis strains from slaughtered cattle in Eritrea
- (2018) Michael Kahsay Ghebremariam et al. PLoS Neglected Tropical Diseases
- Validation of Novel Mycobacterium tuberculosis Isoniazid Resistance Mutations Not Detectable by Common Molecular Tests
- (2018) Justin L. Kandler et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Molecular epidemiology of cattle tuberculosis in Mexico through whole-genome sequencing and spoligotyping
- (2018) Claudia Angélica Perea Razo et al. PLoS One
- A New Phylogenetic Framework for the Animal-Adapted Mycobacterium tuberculosis Complex
- (2018) Daniela Brites et al. Frontiers in Microbiology
- Patterns and Processes of Mycobacterium bovis Evolution Revealed by Phylogenomic Analyses
- (2017) José S.L. Patané et al. Genome Biology and Evolution
- Progenitor strain introduction of Mycobacterium bovis at the wildlife-livestock interface can lead to clonal expansion of the disease in a single ecosystem
- (2017) Anzaan Dippenaar et al. INFECTION GENETICS AND EVOLUTION
- Whole genome sequencing of Mycobacterium bovis to obtain molecular fingerprints in human and cattle isolates from Baja California, Mexico
- (2017) Sarai Estrella Sandoval-Azuara et al. INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES
- Use of whole-genome sequencing and evaluation of the apparent sensitivity and specificity of antemortem tuberculosis tests in the investigation of an unusual outbreak of Mycobacterium bovis infection in a Michigan dairy herd
- (2017) Colleen S. Bruning-Fann et al. JAVMA-JOURNAL OF THE AMERICAN VETERINARY MEDICAL ASSOCIATION
- Zoonotic tuberculosis in human beings caused by Mycobacterium bovis —a call for action
- (2017) Francisco Olea-Popelka et al. LANCET INFECTIOUS DISEASES
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- (2017) Xiaofan Zhou et al. MOLECULAR BIOLOGY AND EVOLUTION
- ModelFinder: fast model selection for accurate phylogenetic estimates
- (2017) Subha Kalyaanamoorthy et al. NATURE METHODS
- Investigation of intra-herd spread of Mycobacterium caprae in cattle by generation and use of a whole-genome sequence
- (2017) S. Broeckl et al. VETERINARY RESEARCH COMMUNICATIONS
- Complete Genome Sequencing of Mycobacterium bovis SP38 and Comparative Genomics of Mycobacterium bovis and M. tuberculosis Strains
- (2017) Cristina Kraemer Zimpel et al. Frontiers in Microbiology
- In silico region of difference (RD) analysis of Mycobacterium tuberculosis complex from sequence reads using RD-Analyzer
- (2016) Kiatichai Faksri et al. BMC GENOMICS
- Substantial molecular evolution and mutation rates in prolonged latent Mycobacterium tuberculosis infection in humans
- (2016) Troels Lillebaek et al. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
- Secretome profiling of highly virulent Mycobacterium bovis 04-303 strain reveals higher abundance of virulence-associated proteins
- (2016) Fernando Vargas-Romero et al. MICROBIAL PATHOGENESIS
- SpoTyping: fast and accurate in silico Mycobacterium spoligotyping from sequence reads
- (2016) Eryu Xia et al. Genome Medicine
- dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
- (2015) Tal Galili BIOINFORMATICS
- Co-evolution ofMycobacterium tuberculosisandHomo sapiens
- (2015) Daniela Brites et al. IMMUNOLOGICAL REVIEWS
- Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study
- (2015) Timothy M Walker et al. LANCET INFECTIOUS DISEASES
- The epidemiology ofMycobacterium bovisin wild deer and feral pigs and their roles in the establishment and spread of bovine tuberculosis in New Zealand wildlife
- (2015) G Nugent et al. NEW ZEALAND VETERINARY JOURNAL
- Toward eradication: the effect ofMycobacterium bovisinfection in wildlife on the evolution and future direction of bovine tuberculosis management in New Zealand
- (2015) PG Livingstone et al. NEW ZEALAND VETERINARY JOURNAL
- Epidemiology and control ofMycobacterium bovisinfection in brushtail possums (Trichosurus vulpecula), the primary wildlife host of bovine tuberculosis in New Zealand
- (2015) G Nugent et al. NEW ZEALAND VETERINARY JOURNAL
- eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
- (2015) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
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- (2015) Adam D. Leaché et al. SYSTEMATIC BIOLOGY
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- (2015) Gemma L. Kay et al. Nature Communications
- Four decades of transmission of a multidrug-resistant Mycobacterium tuberculosis outbreak strain
- (2015) Vegard Eldholm et al. Nature Communications
- Comparative Genomics of Field Isolates of Mycobacterium bovis and M. caprae Provides Evidence for Possible Correlates with Bacterial Viability and Virulence
- (2015) José de la Fuente et al. PLoS Neglected Tropical Diseases
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
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- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
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- (2014) Kirsten I. Bos et al. NATURE
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- Consequences of genomic diversity in Mycobacterium tuberculosis
- (2014) Mireia Coscolla et al. SEMINARS IN IMMUNOLOGY
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- (2013) Manon Ragonnet-Cronin et al. BMC BIOINFORMATICS
- Mycobacterium bovis (bovine tuberculosis) infection in North American wildlife: current status and opportunities for mitigation of risks of further infection in wildlife populations
- (2013) R. S. MILLER et al. EPIDEMIOLOGY AND INFECTION
- Ultrafast Approximation for Phylogenetic Bootstrap
- (2013) B. Q. Minh et al. MOLECULAR BIOLOGY AND EVOLUTION
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- (2013) H. C. J. Godfray et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
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- (2013) M. V. Palmer Transboundary and Emerging Diseases
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- (2013) Salome Dürr et al. PLoS Neglected Tropical Diseases
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- (2013) Caitlin S. Pepperell et al. PLoS Pathogens
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- (2012) Pablo Cingolani et al. FLY
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- (2012) D. C. Koboldt et al. GENOME RESEARCH
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- (2012) Julien Soubrier et al. MOLECULAR BIOLOGY AND EVOLUTION
- Accurate Model Selection of Relaxed Molecular Clocks in Bayesian Phylogenetics
- (2012) Guy Baele et al. MOLECULAR BIOLOGY AND EVOLUTION
- Modeling Protein Evolution with Several Amino Acid Replacement Matrices Depending on Site Rates
- (2012) S. Q. Le et al. MOLECULAR BIOLOGY AND EVOLUTION
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- (2012) Guy Baele et al. MOLECULAR BIOLOGY AND EVOLUTION
- Host-pathogen coevolution in human tuberculosis
- (2012) S. Gagneux PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Modern Lineages of Mycobacterium tuberculosis Exhibit Lineage-Specific Patterns of Growth and Cytokine Induction in Human Monocyte-Derived Macrophages
- (2012) Rajesh Sarkar et al. PLoS One
- Genetic Footprints of Iberian Cattle in America 500 Years after the Arrival of Columbus
- (2012) Amparo M. Martínez et al. PLoS One
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- Evaluation of pathogenesis caused in cattle and guinea pig by a Mycobacterium bovis strain isolated from wild boar
- (2011) Virginia Meikle et al. BMC Veterinary Research
- European 1: A globally important clonal complex of Mycobacterium bovis
- (2011) Noel H. Smith et al. INFECTION GENETICS AND EVOLUTION
- European 2 – A clonal complex of Mycobacterium bovis dominant in the Iberian Peninsula
- (2011) Sabrina Rodriguez-Campos et al. INFECTION GENETICS AND EVOLUTION
- Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection
- (2011) Christopher B Ford et al. NATURE GENETICS
- Human Macrophage Responses to Clinical Isolates from the Mycobacterium tuberculosis Complex Discriminate between Ancient and Modern Lineages
- (2011) Damien Portevin et al. PLoS Pathogens
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- African 2, a Clonal Complex of Mycobacterium bovis Epidemiologically Important in East Africa
- (2010) S. Berg et al. JOURNAL OF BACTERIOLOGY
- Differences between tuberculosis cases infected withMycobacterium africanum, West African type 2, relative to Euro-AmericanMycobacterium tuberculosis: an update
- (2009) Bouke C. de Jong et al. FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY
- African 1, an Epidemiologically Important Clonal Complex of Mycobacterium bovis Dominant in Mali, Nigeria, Cameroon, and Chad
- (2009) B. Muller et al. JOURNAL OF BACTERIOLOGY
- Drivers of tuberculosis epidemics: The role of risk factors and social determinants
- (2009) Knut Lönnroth et al. SOCIAL SCIENCE & MEDICINE
- TNT, a free program for phylogenetic analysis
- (2008) Pablo A. Goloboff et al. CLADISTICS
- STRING 8--a global view on proteins and their functional interactions in 630 organisms
- (2008) L. J. Jensen et al. NUCLEIC ACIDS RESEARCH
- Molecular epidemiology of Mycobacterium bovis isolates from free-ranging wildlife in South African game reserves
- (2008) A.L. Michel et al. VETERINARY MICROBIOLOGY
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