Rhodobacterales and Rhizobiales Are Associated With Stony Coral Tissue Loss Disease and Its Suspected Sources of Transmission

Spatial variations of microbial communities in abyssal and hadal sediments across the Challenger Deep

(2019) Guojie Cui et al.   PeerJ

Extensive coral mortality and critical habitat loss following dredging and their association with remotely-sensed sediment plumes

(2019) Ross Cunning et al.   MARINE POLLUTION BULLETIN

Microbial Community Shifts Associated With the Ongoing Stony Coral Tissue Loss Disease Outbreak on the Florida Reef Tract

(2019) Julie L. Meyer et al.   Frontiers in Microbiology

Oceanographic habitat and the coral microbiomes of urban-impacted reefs

(2019) Stephanie M. Rosales et al.   PeerJ

A rapid spread of the stony coral tissue loss disease outbreak in the Mexican Caribbean

(2019) Lorenzo Alvarez-Filip et al.   PeerJ

Biogeographic Differences in the Microbiome and Pathobiome of the Coral Cladocora caespitosa in the Western Mediterranean Sea

(2018) Esther Rubio-Portillo et al.   Frontiers in Microbiology

Ammonia-Oxidizing Archaea and Bacteria Differentially Contribute to Ammonia Oxidation in Sediments from Adjacent Waters of Rushan Bay, China

(2018) Hui He et al.   Frontiers in Microbiology

Diversity and community structure of marine microbes around the Benham Rise underwater plateau, northeastern Philippines

(2018) Andrian P. Gajigan et al.   PeerJ

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

(2018) F. Joseph Pollock et al.   Nature Communications

Differential disease incidence and mortality of inner and outer reef corals of the upper Florida Keys in association with a white syndrome outbreak

(2018) John P Rippe et al.   BULLETIN OF MARINE SCIENCE

Nitrosopumilus maritimus gen. nov., sp. nov., Nitrosopumilus cobalaminigenes sp. nov., Nitrosopumilus oxyclinae sp. nov., and Nitrosopumilus ureiphilus sp. nov., four marine ammonia-oxidizing archaea of the phylum Thaumarchaeota

(2017) Wei Qin et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Microbial indicators as a diagnostic tool for assessing water quality and climate stress in coral reef ecosystems

(2017) Bettina Glasl et al.   MARINE BIOLOGY

Alien vs. predator: bacterial challenge alters coral microbiomes unless controlled by Halobacteriovorax predators

(2017) Rory M. Welsh et al.   PeerJ

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Detecting sedimentation impacts to coral reefs resulting from dredging the Port of Miami, Florida USA

(2016) Margaret W. Miller et al.   PeerJ

Unprecedented Disease-Related Coral Mortality in Southeastern Florida

(2016) William F. Precht et al.   Scientific Reports

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Stable and sporadic symbiotic communities of coral and algal holobionts

(2015) Eric R Hester et al.   ISME Journal

Microbiomes in light of traits: A phylogenetic perspective

(2015) J. B. H. Martiny et al.   SCIENCE

Sparse and Compositionally Robust Inference of Microbial Ecological Networks

(2015) Zachary D. Kurtz et al.   PLoS Computational Biology

Patterns of benthic bacterial diversity in coastal areas contaminated by heavy metals, polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs)

(2015) Grazia Marina Quero et al.   Frontiers in Microbiology

Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome

(2014) Bryndan P. Durham et al.   Standards in Genomic Sciences

Rhodobacteraceaeare the key members of the microbial community of the initial biofilm formed in Eastern Mediterranean coastal seawater

(2013) Hila Elifantz et al.   FEMS MICROBIOLOGY ECOLOGY

Bacterial profiling of White Plague Disease across corals and oceans indicates a conserved and distinct disease microbiome

(2013) Cornelia Roder et al.   MOLECULAR ECOLOGY

Shifts in bacterial communities of two caribbean reef-building coral species affected by white plague disease

(2011) Anny Cárdenas et al.   ISME Journal

Do the organic sulfur compounds DMSP and DMS drive coral microbial associations?

(2010) Jean-Baptiste Raina et al.   TRENDS IN MICROBIOLOGY

Short-term bacterial community composition dynamics in response to accumulation and breakdown of Microcystis blooms

(2010) Huabing Li et al.   WATER RESEARCH

Temporal changes of major bacterial groups and bacterial heterotrophic activity during a Phaeocystis globosa bloom in the eastern English Channel

(2009) D Lamy et al.   AQUATIC MICROBIAL ECOLOGY

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata

(2009) Shinichi Sunagawa et al.   ISME Journal

Diversity, ecology, and genomics of the Roseobacter clade: a short overview

(2008) Thorsten Brinkhoff et al.   ARCHIVES OF MICROBIOLOGY