Microbial Community Shifts Associated With the Ongoing Stony Coral Tissue Loss Disease Outbreak on the Florida Reef Tract

Host-Microbe Coevolution: Applying Evidence from Model Systems to Complex Marine Invertebrate Holobionts

(2019) Paul A. O’Brien et al.   mBio

Coral bacterial community structure responds to environmental change in a host-specific manner

(2019) Maren Ziegler et al.   Nature Communications

Structure and stability of the coral microbiome in space and time

(2019) Courtney M. Dunphy et al.   Scientific Reports

Factors affecting infection of corals and larval oysters by Vibrio coralliilyticus

(2018) Blake Ushijima et al.   PLoS One

Ecological and molecular characterization of a coral black band disease outbreak in the Red Sea during a bleaching event

(2018) Ghaida Hadaidi et al.   PeerJ

Coral microbiome database: Integration of sequences reveals high diversity and relatedness of coral-associated microbes

(2018) Megan J. Huggett et al.   Environmental Microbiology Reports

Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

(2018) F. Joseph Pollock et al.   Nature Communications

Differential disease incidence and mortality of inner and outer reef corals of the upper Florida Keys in association with a white syndrome outbreak

(2018) John P Rippe et al.   BULLETIN OF MARINE SCIENCE

Comparative genomics of the DNA damage-inducible network in the Patescibacteria

(2017) Miquel Sánchez-Osuna et al.   ENVIRONMENTAL MICROBIOLOGY

Disentangling causation: complex roles of coral-associated microorganisms in disease

(2017) Hanaka Mera et al.   ENVIRONMENTAL MICROBIOLOGY

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Microbiome Datasets Are Compositional: And This Is Not Optional

(2017) Gregory B. Gloor et al.   Frontiers in Microbiology

Stress and stability: applying the Anna Karenina principle to animal microbiomes

(2017) Jesse R. Zaneveld et al.   Nature Microbiology

Integrated approach to understanding the onset and pathogenesis of black band disease in corals

(2016) Yui Sato et al.   ENVIRONMENTAL MICROBIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan

(2016) Feng Gao et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Caribbean corals house shared and host-specific microbial symbionts over time and space

(2016) Nathaniel D. Chu et al.   Environmental Microbiology Reports

Microbial Dysbiosis: Rethinking Disease in Marine Ecosystems

(2016) Suhelen Egan et al.   Frontiers in Microbiology

Detecting sedimentation impacts to coral reefs resulting from dredging the Port of Miami, Florida USA

(2016) Margaret W. Miller et al.   PeerJ

Unprecedented Disease-Related Coral Mortality in Southeastern Florida

(2016) William F. Precht et al.   Scientific Reports

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

zCompositions — R package for multivariate imputation of left-censored data under a compositional approach

(2015) Javier Palarea-Albaladejo et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

Changes in the bacterial community associated with black band disease in a Red Sea coral, Favia sp., in relation to disease phases

(2015) L Arotsker et al.   DISEASES OF AQUATIC ORGANISMS

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Rapid Recent Warming of Coral Reefs in the Florida Keys

(2015) Derek P. Manzello   Scientific Reports

Microbial diversity and activity in the Nematostella vectensis holobiont: insights from 16S rRNA gene sequencing, isolate genomes, and a pilot-scale survey of gene expression

(2015) Jia Y. Har et al.   Frontiers in Microbiology

Vibrio coralliilyticus Strain OCN008 Is an Etiological Agent of Acute Montipora White Syndrome

(2014) Blake Ushijima et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Microbiome of the Red Sea Coral Stylophora pistillata Is Dominated by Tissue-Associated Endozoicomonas Bacteria

(2013) Till Bayer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial profiling of White Plague Disease in a comparative coral species framework

(2013) Cornelia Roder et al.   ISME Journal

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

The keystone-pathogen hypothesis

(2012) George Hajishengallis et al.   NATURE REVIEWS MICROBIOLOGY

Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla

(2012) K. C. Wrighton et al.   SCIENCE

Coral Black Band Disease Microbial Communities and Genotypic Variability of the Dominant Cyanobacteria (CD1C11)

(2011) James S Klaus et al.   BULLETIN OF MARINE SCIENCE

Human sewage identified as likely source of white pox disease of the threatened Caribbean elkhorn coral, Acropora palmata

(2010) Kathryn Patterson Sutherland et al.   ENVIRONMENTAL MICROBIOLOGY

A meta-analysis of 16S rRNA gene clone libraries from the polymicrobial black band disease of corals

(2010) Aaron W. Miller et al.   FEMS MICROBIOLOGY ECOLOGY

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata

(2009) Shinichi Sunagawa et al.   ISME Journal

Resilience of Coral-Associated Bacterial Communities Exposed to Fish Farm Effluent

(2009) Melissa Garren et al.   PLoS One

Temperature thresholds for bacterial symbiosis with a sponge

(2008) Nicole S Webster et al.   ISME Journal

Microbial community composition of black band disease on the coral host Siderastrea siderea from three regions of the wider Caribbean

(2008) R Sekar et al.   MARINE ECOLOGY PROGRESS SERIES