Cell-type diversity and regionalized gene expression in the planarian intestine
Published 2020 View Full Article
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Title
Cell-type diversity and regionalized gene expression in the planarian intestine
Authors
Keywords
-
Journal
eLife
Volume 9, Issue -, Pages -
Publisher
eLife Sciences Publications, Ltd
Online
2020-04-02
DOI
10.7554/elife.52613
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Note: Only part of the references are listed.- Single-cell transcriptomes of the regenerating intestine reveal a revival stem cell
- (2019) Arshad Ayyaz et al. NATURE
- Active mode of excretion across digestive tissues predates the origin of excretory organs
- (2019) Carmen Andrikou et al. PLOS BIOLOGY
- Prospectively Isolated Tetraspanin + Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration
- (2018) An Zeng et al. CELL
- Laser microdissection: A powerful tool for genomics at cell level
- (2018) Claudia Bevilacqua et al. MOLECULAR ASPECTS OF MEDICINE
- Goblet cells: multifaceted players in immunity at mucosal surfaces
- (2018) Kathryn A. Knoop et al. Mucosal Immunology
- Bias, robustness and scalability in single-cell differential expression analysis
- (2018) Charlotte Soneson et al. NATURE METHODS
- UniProt: the universal protein knowledgebase
- (2018) The UniProt Consortium NUCLEIC ACIDS RESEARCH
- Cell type transcriptome atlas for the planarianSchmidtea mediterranea
- (2018) Christopher T. Fincher et al. SCIENCE
- Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics
- (2018) Mireya Plass et al. SCIENCE
- It is not all about regeneration: Planarians striking power to stand starvation
- (2018) Daniel A. Felix et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Regenerative tissue remodeling in planarians – The mysteries of morphallaxis
- (2018) Jason Pellettieri SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms
- (2018) Markus Alexander Grohme et al. NATURE
- Conservation of epigenetic regulation by the MLL3/4 tumour suppressor in planarian pluripotent stem cells
- (2018) Yuliana Mihaylova et al. Nature Communications
- Intestinal renewal across the animal kingdom: comparing stem cell activity in mouse and Drosophila
- (2018) Rachel K. Zwick et al. AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY
- The Cellular and Molecular Basis for Planarian Regeneration
- (2018) Peter W. Reddien CELL
- foxF-1 Controls Specification of Non-body Wall Muscle and Phagocytic Cells in Planarians
- (2018) M. Lucila Scimone et al. CURRENT BIOLOGY
- Burden and Cost of Gastrointestinal, Liver, and Pancreatic Diseases in the United States: Update 2018
- (2018) Anne F. Peery et al. GASTROENTEROLOGY
- Tales from the crypt: new insights into intestinal stem cells
- (2018) Helmuth Gehart et al. Nature Reviews Gastroenterology & Hepatology
- The pioneer factor Smed-gata456-1 is required for gut cell differentiation and maintenance in planarians
- (2017) Alejandro González-Sastre et al. INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY
- 20 years of the SMART protein domain annotation resource
- (2017) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Stem Cells in Repair of Gastrointestinal Epithelia
- (2017) Amanda Andersson-Rolf et al. PHYSIOLOGY
- The sea cucumber genome provides insights into morphological evolution and visceral regeneration
- (2017) Xiaojun Zhang et al. PLOS BIOLOGY
- The Molecular and Cellular Choreography of Appendage Regeneration
- (2016) Elly M. Tanaka CELL
- De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data
- (2016) Dominic Grün et al. Cell Stem Cell
- Intestinal stem cell response to injury: lessons from Drosophila
- (2016) Huaqi Jiang et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- The EGFR signaling pathway controls gut progenitor differentiation during planarian regeneration and homeostasis
- (2016) Sara Barberán et al. DEVELOPMENT
- Simple blood-feeding method for live imaging of gut tube remodeling in regenerating planarians
- (2016) Kazutaka Hosoda et al. DEVELOPMENT GROWTH & DIFFERENTIATION
- Essential role for the planarian intestinal GATA transcription factor in stem cells and regeneration
- (2016) Natasha M. Flores et al. DEVELOPMENTAL BIOLOGY
- Egf Signaling Directs Neoblast Repopulation by Regulating Asymmetric Cell Division in Planarians
- (2016) Kai Lei et al. DEVELOPMENTAL CELL
- Muscle-derived matrix metalloproteinase regulates stem cell proliferation in planarians
- (2016) Caitlin B. Dingwall et al. DEVELOPMENTAL DYNAMICS
- Gastrointestinal stem cells in health and disease: from flies to humans
- (2016) Hongjie Li et al. Disease Models & Mechanisms
- PCSK1 Mutations and Human Endocrinopathies: From Obesity to Gastrointestinal Disorders
- (2016) Pieter Stijnen et al. ENDOCRINE REVIEWS
- Searching the Evolutionary Origin of Epithelial Mucus Protein Components—Mucins and FCGBP
- (2016) Tiange Lang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Injury-induced ctgfa directs glial bridging and spinal cord regeneration in zebrafish
- (2016) M. H. Mokalled et al. SCIENCE
- Hedgehog signaling regulates gene expression in planarian glia
- (2016) Irving E Wang et al. eLife
- Neuronal sources of hedgehog modulate neurogenesis in the adult planarian brain
- (2016) Ko W Currie et al. eLife
- Pathogenic shifts in endogenous microbiota impede tissue regeneration via distinct activation of TAK1/MKK/p38
- (2016) Christopher P Arnold et al. eLife
- Novel monoclonal antibodies to study tissue regeneration in planarians
- (2015) Kelly G Ross et al. BMC DEVELOPMENTAL BIOLOGY
- Light and electron microscopic studies of the intestinal epithelium in Notoplana humilis (Platyhelminthes, Polycladida): the contribution of mesodermal/gastrodermal neoblasts to intestinal regeneration
- (2015) Daisuke Okano et al. CELL AND TISSUE RESEARCH
- Phylogenomic Insights into Animal Evolution
- (2015) Maximilian J. Telford et al. CURRENT BIOLOGY
- On the organ trail: insights into organ regeneration in the planarian
- (2015) Rachel H Roberts-Galbraith et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Identification of HECT E3 ubiquitin ligase family genes involved in stem cell regulation and regeneration in planarians
- (2015) Jordana M. Henderson et al. DEVELOPMENTAL BIOLOGY
- A Generic and Cell-Type-Specific Wound Response Precedes Regeneration in Planarians
- (2015) Omri Wurtzel et al. DEVELOPMENTAL CELL
- SmedGD 2.0: TheSchmidtea mediterraneagenome database
- (2015) Sofia M.C. Robb et al. GENESIS
- Injury-stimulated Hedgehog signaling promotes regenerative proliferation ofDrosophilaintestinal stem cells
- (2015) Aiguo Tian et al. JOURNAL OF CELL BIOLOGY
- High-quality RNA extraction from copepods for Next Generation Sequencing: A comparative study
- (2015) Sneha Asai et al. Marine Genomics
- New developments in goblet cell mucus secretion and function
- (2015) G M H Birchenough et al. Mucosal Immunology
- Unleashing the therapeutic potential of human kallikrein-related serine proteases
- (2015) Ioannis Prassas et al. NATURE REVIEWS DRUG DISCOVERY
- PlanMine – a mineable resource of planarian biology and biodiversity
- (2015) Holger Brandl et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Tissue-based map of the human proteome
- (2015) M. Uhlen et al. SCIENCE
- Three cheers for the goblet cell: maintaining homeostasis in mucosal epithelia
- (2015) Heather A. McCauley et al. TRENDS IN MOLECULAR MEDICINE
- β-Catenin-Dependent Control of Positional Information along the AP Body Axis in Planarians Involves a Teashirt Family Member
- (2015) Hanna Reuter et al. Cell Reports
- Stem cells and fluid flow drive cyst formation in an invertebrate excretory organ
- (2015) Hanh Thi-Kim Vu et al. eLife
- Nrg1 is an injury-induced cardiomyocyte mitogen for the endogenous heart regeneration program in zebrafish
- (2015) Matthew Gemberling et al. eLife
- Hindsight/RREB-1 functions in both the specification and differentiation of stem cells in the adult midgut ofDrosophila
- (2015) Brittany L. Baechler et al. Biology Open
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- (2014) Prasad Abnave et al. Cell Host & Microbe
- Single-Cell Analysis Reveals Functionally Distinct Classes within the Planarian Stem Cell Compartment
- (2014) Josien C. van Wolfswinkel et al. Cell Stem Cell
- CDD: NCBI's conserved domain database
- (2014) Aron Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- Loss of Sonic Hedgehog Leads to Alterations in Intestinal Secretory Cell Maturation and Autophagy
- (2014) Jessica Gagné-Sansfaçon et al. PLoS One
- In situ hybridization protocol for enhanced detection of gene expression in the planarian Schmidtea mediterranea
- (2013) Ryan S King et al. BMC DEVELOPMENTAL BIOLOGY
- Peptidoglycan recognition proteins in Drosophila immunity
- (2013) Shoichiro Kurata DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- RNA interference by feeding in vitro-synthesized double-stranded RNA to planarians: Methodology and dynamics
- (2013) Labib Rouhana et al. DEVELOPMENTAL DYNAMICS
- The molecular logic for planarian regeneration along the anterior–posterior axis
- (2013) Yoshihiko Umesono et al. NATURE
- Follistatin antagonizes Activin signaling and acts with Notum to direct planarian head regeneration
- (2013) Rachel H. Roberts-Galbraith et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Kallikrein-related peptidases (KLKs) in gastrointestinal cancer: Mechanistic and clinical aspects
- (2013) Christos K. Kontos et al. THROMBOSIS AND HAEMOSTASIS
- Muscle Cells Provide Instructions for Planarian Regeneration
- (2013) Jessica N. Witchley et al. Cell Reports
- Tissue absence initiates regeneration through Follistatin-mediated inhibition of Activin signaling
- (2013) Michael A Gaviño et al. eLife
- An RNAi Screen Reveals Intestinal Regulators of Branching Morphogenesis, Differentiation, and Stem Cell Proliferation in Planarians
- (2012) David J. Forsthoefel et al. DEVELOPMENTAL CELL
- An insulin-like peptide regulates size and adult stem cells in planarians
- (2012) Claire M. Miller et al. INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY
- Hedgehog signaling displays a biphasic expression pattern during intestinal injury and repair
- (2012) Rui Liang et al. JOURNAL OF PEDIATRIC SURGERY
- Proteomic Profiling of the PlanarianSchmidtea mediterraneaand Its Mucous Reveals Similarities with Human Secretions and Those Predicted for Parasitic Flatworms
- (2012) Donald G. Bocchinfuso et al. MOLECULAR & CELLULAR PROTEOMICS
- NIH Image to ImageJ: 25 years of image analysis
- (2012) Caroline A Schneider et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- A Comparative Transcriptomic Analysis Reveals Conserved Features of Stem Cell Pluripotency in Planarians and Mammals
- (2012) Roselyne M. Labbé et al. STEM CELLS
- Large scale gene expression profiling during intestine and body wall regeneration in the sea cucumber Apostichopus japonicus
- (2011) Lina Sun et al. Comparative Biochemistry and Physiology D-Genomics & Proteomics
- The maintenance and regeneration of the planarian excretory system are regulated by EGFR signaling
- (2011) J. C. Rink et al. DEVELOPMENT
- A regulatory program for excretory system regeneration in planarians
- (2011) M. L. Scimone et al. DEVELOPMENT
- Stem cell-based growth, regeneration, and remodeling of the planarian intestine
- (2011) David J. Forsthoefel et al. DEVELOPMENTAL BIOLOGY
- Evolution of a novel developmental trajectory: fission is distinct from regeneration in the annelid Pristina leidyi
- (2011) Eduardo E. Zattara et al. EVOLUTION & DEVELOPMENT
- Clonogenic Neoblasts Are Pluripotent Adult Stem Cells That Underlie Planarian Regeneration
- (2011) D. E. Wagner et al. SCIENCE
- Regeneration of the gut requires retinoic acid in the budding ascidian Polyandrocarpa misakiensis
- (2010) Nagamoto Kaneko et al. DEVELOPMENT GROWTH & DIFFERENTIATION
- The use of lectins as markers for differentiated secretory cells in planarians
- (2010) Ricardo M. Zayas et al. DEVELOPMENTAL DYNAMICS
- Intestinal tissue kallikrein-kinin system in inflammatory bowel disease
- (2010) Antoni Stadnicki INFLAMMATORY BOWEL DISEASES
- Why Does Insect RNA Look Degraded?
- (2010) Eva C. Winnebeck et al. JOURNAL OF INSECT SCIENCE
- The two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host-microbial interactions
- (2010) M. E. V. Johansson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-Wide Analyses Reveal a Role for Peptide Hormones in Planarian Germline Development
- (2010) James J. Collins et al. PLOS BIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Gene expression profiling of intestinal regeneration in the sea cucumber
- (2009) Pablo A Ortiz-Pineda et al. BMC GENOMICS
- Emerging patterns in planarian regeneration
- (2009) David J Forsthoefel et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- The Zn Finger protein Iguana impacts Hedgehog signaling by promoting ciliogenesis
- (2009) Andrew M. Glazer et al. DEVELOPMENTAL BIOLOGY
- A Developmental Perspective: Changes in the Position of the Blastopore during Bilaterian Evolution
- (2009) Mark Q. Martindale et al. DEVELOPMENTAL CELL
- Formaldehyde-based whole-mount in situ hybridization method for planarians
- (2009) Bret J. Pearson et al. DEVELOPMENTAL DYNAMICS
- Planarian Hedgehog/Patched establishes anterior–posterior polarity by regulating Wnt signaling
- (2009) Shigenobu Yazawa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Planarian Hh Signaling Regulates Regeneration Polarity and Links Hh Pathway Evolution to Cilia
- (2009) J. C. Rink et al. SCIENCE
- Silencing of Smed- catenin1 generates radial-like hypercephalized planarians
- (2008) M. Iglesias et al. DEVELOPMENT
- Morphallactic regeneration as revealed by region-specific gene expression in the digestive tract ofEnchytraeus japonensis(Oligochaeta, Annelida)
- (2008) Makoto Takeo et al. DEVELOPMENTAL DYNAMICS
- The Atg8 Conjugation System Is Indispensable for Proper Development of Autophagic Isolation Membranes in Mice
- (2008) Yu-shin Sou et al. MOLECULAR BIOLOGY OF THE CELL
- A Potential Role for Drosophila Mucins in Development and Physiology
- (2008) Zulfeqhar A. Syed et al. PLoS One
- -Catenin Defines Head Versus Tail Identity During Planarian Regeneration and Homeostasis
- (2007) K. A. Gurley et al. SCIENCE
- Smed- catenin-1 Is Required for Anteroposterior Blastema Polarity in Planarian Regeneration
- (2007) C. P. Petersen et al. SCIENCE
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