PlanMine – a mineable resource of planarian biology and biodiversity

SmedGD 2.0: TheSchmidtea mediterraneagenome database

(2015) Sofia M.C. Robb et al.   GENESIS

β-Catenin-Dependent Control of Positional Information along the AP Body Axis in Planarians Involves a Teashirt Family Member

(2015) Hanna Reuter et al.   Cell Reports

A mex3 homolog is required for differentiation during planarian stem cell lineage development

(2015) Shu Jun Zhu et al.   eLife

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Single-Cell Analysis Reveals Functionally Distinct Classes within the Planarian Stem Cell Compartment

(2014) Josien C. van Wolfswinkel et al.   Cell Stem Cell

Whole-Body Acoel Regeneration Is Controlled by Wnt and Bmp-Admp Signaling

(2014) Mansi Srivastava et al.   CURRENT BIOLOGY

Stem cell-dependent formation of a functional anterior regeneration pole in planarians requires Zic and Forkhead transcription factors

(2014) Matthias C. Vogg et al.   DEVELOPMENTAL BIOLOGY

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

Synaptonemal complex extension from clustered telomeres mediates full-length chromosome pairing inSchmidtea mediterranea

(2014) Youbin Xiang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The planarian regeneration transcriptome reveals a shared but temporally shifted regulatory program between opposing head and tail scenarios

(2013) Damian Kao et al.   BMC GENOMICS

Transcription factors lhx1/5-1 and pitx are required for the maintenance and regeneration of serotonergic neurons in planarians

(2013) K. W. Currie et al.   DEVELOPMENT

Reactivating head regrowth in a regeneration-deficient planarian species

(2013) S.-Y. Liu et al.   NATURE

The molecular logic for planarian regeneration along the anterior–posterior axis

(2013) Yoshihiko Umesono et al.   NATURE

Restoration of anterior regeneration in a planarian with limited regenerative ability

(2013) James M. Sikes et al.   NATURE

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

RefSeq: an update on mammalian reference sequences

(2013) Kim D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data

(2012) Richard N. Smith et al.   BIOINFORMATICS

PRMT5 and the role of symmetrical dimethylarginine in chromatoid bodies of planarian stem cells

(2012) L. Rouhana et al.   DEVELOPMENT

Stem cell systems and regeneration in planaria

(2012) Jochen C. Rink   DEVELOPMENT GENES AND EVOLUTION

Planarian regeneration: a classic topic claiming new attention

(2012) Emili Saló et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Telomere maintenance and telomerase activity are differentially regulated in asexual and sexual worms

(2012) T. C. J. Tan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Comparative Transcriptomic Analysis Reveals Conserved Features of Stem Cell Pluripotency in Planarians and Mammals

(2012) Roselyne M. Labbé et al.   STEM CELLS

Defining the molecular profile of planarian pluripotent stem cells using a combinatorial RNA-seq, RNA interference and irradiation approach

(2012) Jordi Solana et al.   GENOME BIOLOGY

Lack of metabolic ageing in the long-lived flatworm Schmidtea polychroa

(2011) Stijn Mouton et al.   EXPERIMENTAL GERONTOLOGY

De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics

(2011) C. Adamidi et al.   GENOME RESEARCH

Planarian stem cells: a simple paradigm for regeneration

(2011) A. Aziz Aboobaker   TRENDS IN CELL BIOLOGY

The head-regeneration transcriptome of the planarian Schmidtea mediterranea

(2011) Thomas Sandmann et al.   GENOME BIOLOGY

The planarian flatworm: an in vivo model for stem cell biology and nervous system regeneration

(2010) L. Gentile et al.   Disease Models & Mechanisms

Emerging patterns in planarian regeneration

(2009) David J Forsthoefel et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH