Factors Obscuring the Role of E. coli from Domestic Animals in the Global Antimicrobial Resistance Crisis: An Evidence-Based Review

One Health Genomic Surveillance of Escherichia coli Demonstrates Distinct Lineages and Mobile Genetic Elements in Isolates from Humans versus Livestock

(2019) Catherine Ludden et al.   mBio

Detection and Characterization of ESBL-Producing Escherichia coli From Humans and Poultry in Ghana

(2019) Linda Falgenhauer et al.   Frontiers in Microbiology

Interactions between plasmids and other mobile genetic elements affect their transmission and persistence

(2019) Francisco Dionisio et al.   PLASMID

Diverse Commensal Escherichia coli Clones and Plasmids Disseminate Antimicrobial Resistance Genes in Domestic Animals and Children in a Semirural Community in Ecuador

(2019) Liseth Salinas et al.   mSphere

Whole Genome Sequence Analysis Reveals Lower Diversity and Frequency of Acquired Antimicrobial Resistance (AMR) Genes in E. coli From Dairy Herds Compared With Human Isolates From the Same Region of Central Zambia

(2019) Geoffrey Mainda et al.   Frontiers in Microbiology

Inter-host Transmission of Carbapenemase-Producing Escherichia coli among Humans and Backyard Animals

(2019) Jiyun Li et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Diverse Escherichia coli isolates from domestic animal in the same Ecuadorian household all carry the colistin resistance gene mcr1.1

(2019) María Fernanda Loayza-Villa et al.   Journal of Global Antimicrobial Resistance

Changes in dominant Escherichia coli and antimicrobial resistance after 24 hr in fecal matter

(2018) Sofía Barrera et al.   MicrobiologyOpen

Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany

(2018) Michael Pietsch et al.   BMC GENOMICS

Escherichia coli ST131-H22 as a Foodborne Uropathogen

(2018) Cindy M. Liu et al.   mBio

Responses of the Human Gut Escherichia coli Population to Pathogen and Antibiotic Disturbances

(2018) Taylor K. S. Richter et al.   mSystems

High Prevalence of Extended-Spectrum Beta-Lactamase CTX-M–Producing Escherichia coli in Small-Scale Poultry Farming in Rural Ecuador

(2018) Hayden D. Hedman et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Limited contribution of non-intensive chicken farming to ESBL-producing Escherichia coli colonization in humans in Vietnam: an epidemiological and genomic analysis

(2018) Vinh Trung Nguyen et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Transmission modes of the mammalian gut microbiota

(2018) Andrew H. Moeller et al.   SCIENCE

Small-Scale Food Animal Production and Antimicrobial Resistance: Mountain, Molehill, or Something in-between?

(2017) Jay P. Graham et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Animal Feces Contribute to Domestic Fecal Contamination: Evidence from E. coli Measured in Water, Hands, Food, Flies, and Soil in Bangladesh

(2017) Ayse Ercumen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Molecular relatedness of ESBL/AmpC-producing Escherichia coli from humans, animals, food and the environment: a pooled analysis

(2017) Alejandro Dorado-García et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Colonizing opportunistic pathogens (COPs): The beasts in all of us

(2017) Lance B. Price et al.   PLoS Pathogens

Global phylogenetic analysis of Escherichia coli and plasmids carrying the mcr-1 gene indicates bacterial diversity but plasmid restriction

(2017) Sébastien Matamoros et al.   Scientific Reports

Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance GeneblaKPC

(2016) Anna E. Sheppard et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The Bacterial Mobile Resistome Transfer Network Connecting the Animal and Human Microbiomes

(2016) Yongfei Hu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Why is antibiotic resistance a deadly emerging disease?

(2016) P. Courvalin   CLINICAL MICROBIOLOGY AND INFECTION

Overview: Global and Local Impact of Antibiotic Resistance

(2016) Richard R. Watkins et al.   INFECTIOUS DISEASE CLINICS OF NORTH AMERICA

Circulation of clonal populations of fluoroquinolone-resistant CTX-M-15-producing Escherichia coli ST410 in humans and animals in Germany

(2016) Linda Falgenhauer et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Diversity of STs, plasmids and ESBL genes amongEscherichia colifrom humans, animals and food in Germany, the Netherlands and the UK

(2016) Michaela J. Day et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study

(2016) Yi-Yun Liu et al.   LANCET INFECTIOUS DISEASES

Phylogenetic, virulence and antibiotic resistance characteristics of commensal strain populations of Escherichia coli from community subjects in the Paris area in 2010 and evolution over 30 years

(2016) Méril Massot et al.   MICROBIOLOGY-SGM

An evaluation of logic regression-based biomarker discovery across multiple intergenic regions for predicting host specificity in Escherichia coli

(2016) Shuai Zhi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Use antimicrobials wisely

(2016) Peter S. Jørgensen et al.   NATURE

Plasmid Dynamics in KPC-Positive Klebsiella pneumoniae during Long-Term Patient Colonization

(2016) Sean Conlan et al.   mBio

Epidemiology and burden of multidrug-resistant bacterial infection in a developing country

(2016) Cherry Lim et al.   eLife

Genomic Microbial Epidemiology Is Needed to Comprehend the Global Problem of Antibiotic Resistance and to Improve Pathogen Diagnosis

(2016) Ethan R. Wyrsch et al.   Frontiers in Microbiology

The Risk of Some Veterinary Antimicrobial Agents on Public Health Associated with Antimicrobial Resistance and their Molecular Basis

(2016) Haihong Hao et al.   Frontiers in Microbiology

The structure and diversity of human, animal and environmental resistomes

(2016) Chandan Pal et al.   Microbiome

Antibiotic Resistance in Animal and Environmental Samples Associated with Small-Scale Poultry Farming in Northwestern Ecuador

(2016) Nikolay P. Braykov et al.   mSphere

Comparison between different D-Dimer cutoff values to assess the individual risk of recurrent venous thromboembolism: analysis of results obtained in the DULCIS study

(2015) G. Palareti et al.   International Journal of Laboratory Hematology

Assessing host-specificity of Escherichia coli using a supervised learning logic-regression-based analysis of single nucleotide polymorphisms in intergenic regions

(2015) Shuai Zhi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The human gut resistome

(2015) W. van Schaik   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Global trends in antimicrobial use in food animals

(2015) Thomas P. Van Boeckel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecology and Evolution of the Human Microbiota: Fire, Farming and Antibiotics

(2015) Michael Gillings et al.   Genes

Quantitative analysis of commensalEscherichia colipopulations reveals host-specific enterotypes at the intra-species level

(2015) Mounira Smati et al.   MicrobiologyOpen

High Throughput Profiling of Antibiotic Resistance Genes in Urban Park Soils with Reclaimed Water Irrigation

(2014) Feng-Hua Wang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Antimicrobial stewardship programs – cost-minimizing or cost-effective?

(2014) Joyce You   EXPERT OPINION ON PHARMACOTHERAPY

Subgrouping of ESBL-producing Escherichia coli from animal and human sources: An approach to quantify the distribution of ESBL types between different reservoirs

(2014) Lars Valentin et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

The Yin and Yang of Bacterial Resilience in the Human Gut Microbiota

(2014) Molly K. Gibson et al.   JOURNAL OF MOLECULAR BIOLOGY

Opinions of Spanish pig producers on the role, the level and the risk to public health of antimicrobial use in pigs

(2014) Miguel A. Moreno   RESEARCH IN VETERINARY SCIENCE

Understanding antimicrobial use and prescribing behaviours by pig veterinary surgeons and farmers: a qualitative study

(2014) L. A. Coyne et al.   VETERINARY RECORD

Dissemination of Cephalosporin Resistance Genes between Escherichia coli Strains from Farm Animals and Humans by Specific Plasmid Lineages

(2014) Mark de Been et al.   PLoS Genetics

Short-sighted evolution of bacterial opportunistic pathogens with an environmental origin

(2014) José L. Martínez   Frontiers in Microbiology

Horizontal gene transfer in the human gastrointestinal tract: potential spread of antibiotic resistance genes

(2014) Jennifer R Huddleston   Infection and Drug Resistance

Antimicrobial Resistance in Indicator Escherichia coli Isolates from Free-Ranging Livestock and Sympatric Wild Ungulates in a Natural Environment (Northeastern Spain)

(2013) N. Navarro-Gonzalez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Infecciones causadas por bacterias grampositivas multirresistentes (Staphylococcus aureus y Enterococcus spp.)

(2013) Rafael Cantón et al.   ENFERMEDADES INFECCIOSAS Y MICROBIOLOGIA CLINICA

Clinical relevance of the ESKAPE pathogens

(2013) Jack N Pendleton et al.   Expert Review of Anti-Infective Therapy

Correlation between veterinary antimicrobial use and antimicrobial resistance in food-producing animals: a report on seven countries

(2013) I. Chantziaras et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Pig farmers’ perceptions, attitudes, influences and management of information in the decision-making process for disease control

(2013) Pablo Alarcon et al.   PREVENTIVE VETERINARY MEDICINE

Escherichia coli O157:H7 in Ecuador: Animal Reservoirs, Yet No Human Disease

(2013) Gabriel Trueba et al.   VECTOR-BORNE AND ZOONOTIC DISEASES

Antimicrobial Resistance in the Food Chain: A Review

(2013) Claire Verraes et al.   International Journal of Environmental Research and Public Health

Reclaimed water as a reservoir of antibiotic resistance genes: distribution system and irrigation implications

(2013) Nicole Fahrenfeld et al.   Frontiers in Microbiology

Mobile elements, zoonotic pathogens and commensal bacteria: conduits for the delivery of resistance genes into humans, production animals and soil microbiota

(2013) Steven P. Djordjevic et al.   Frontiers in Microbiology

Multidrug resistant commensal Escherichia coli in animals and its impact for public health

(2013) Ama Szmolka et al.   Frontiers in Microbiology

Evolution of antibiotic resistance at non-lethal drug concentrations

(2012) Dan I. Andersson et al.   DRUG RESISTANCE UPDATES

The ClermontEscherichia coliphylo-typing method revisited: improvement of specificity and detection of new phylo-groups

(2012) Olivier Clermont et al.   Environmental Microbiology Reports

CTX-M Enzymes: Origin and Diffusion

(2012) Rafael Cantón et al.   Frontiers in Microbiology

Food Animals and Antimicrobials: Impacts on Human Health

(2011) B. M. Marshall et al.   CLINICAL MICROBIOLOGY REVIEWS

Monitoring horizontal antibiotic resistance gene transfer in a colonic fermentation model

(2011) Martina C. Haug et al.   FEMS MICROBIOLOGY ECOLOGY

Tackling antibiotic resistance

(2011) Karen Bush et al.   NATURE REVIEWS MICROBIOLOGY

Rates of Mutation and Host Transmission for an Escherichia coli Clone over 3 Years

(2011) Peter R. Reeves et al.   PLoS One

Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora

(2009) M. O. A. Sommer et al.   SCIENCE

Impact of Diversity of Colonizing Strains on Strategies for Sampling Escherichia coli from Fecal Specimens

(2008) E. Lautenbach et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Evolution of Resistance in Poultry Intestinal Escherichia coli During Three Commonly Used Antimicrobial Therapeutic Treatments in Poultry

(2008) J. M. Miranda et al.   POULTRY SCIENCE