Effects of sampling seasons and locations on fish environmental DNA metabarcoding in dam reservoirs

Optimizing environmental DNA sampling effort for fish inventories in tropical streams and rivers

(2019) Isabel Cantera et al.   Scientific Reports

Environmental DNA metabarcoding for fish community analysis in backwater lakes: A comparison of capture methods

(2019) Kazuya Fujii et al.   PLoS One

Assessment of fish communities using environmental DNA: Effect of spatial sampling design in lentic systems of different sizes

(2019) Shan Zhang et al.   Molecular Ecology Resources

eDNA metabarcoding as a promising conservation tool for monitoring fish diversity in a coastal wetland of the Pearl River Estuary compared to bottom trawling

(2019) Keshu Zou et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Seasonal variation in environmental DNA detection in sediment and water samples

(2018) Andrew S. Buxton et al.   PLoS One

Effects of sampling effort on biodiversity patterns estimated from environmental DNA metabarcoding surveys

(2018) Erin K. Grey et al.   Scientific Reports

Seawater environmental DNA reflects seasonality of a coastal fish community

(2017) Eva Egelyng Sigsgaard et al.   MARINE BIOLOGY

Identifying a breeding habitat of a critically endangered fish, Acheilognathus typus, in a natural river in Japan

(2017) Masayuki K. Sakata et al.   NATURWISSENSCHAFTEN

Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity

(2017) Iliana Bista et al.   Nature Communications

Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities

(2017) Hirotoshi Sato et al.   Scientific Reports

Identifying a breeding habitat of a critically endangered fish, Acheilognathus typus, in a natural river in Japan

(2017) Masayuki K. Sakata et al.   Science of Nature

Environmental DNA monitoring and management of invasive fish: comparison of eDNA and fyke netting

(2017) Rheyda Hinlo et al.   Management of Biological Invasions

Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary

(2017) Mark Y. Stoeckle et al.   PLoS One

Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea

(2017) Satoshi Yamamoto et al.   Scientific Reports

Seasonal variation in environmental DNA in relation to population size and environmental factors

(2017) Andrew S. Buxton et al.   Scientific Reports

Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system

(2016) Jennifer L.A. Shaw et al.   BIOLOGICAL CONSERVATION

Environmental DNA analysis for estimating the abundance and biomass of stream fish

(2016) Hideyuki Doi et al.   FRESHWATER BIOLOGY

A simple method for preserving environmental DNA in water samples at ambient temperature by addition of cationic surfactant

(2016) Hiroki Yamanaka et al.   LIMNOLOGY

Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods

(2016) Bernd Hänfling et al.   MOLECULAR ECOLOGY

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

How to limit false positives in environmental DNA and metabarcoding?

(2016) Gentile Francesco Ficetola et al.   Molecular Ecology Resources

Spatial Representativeness of Environmental DNA Metabarcoding Signal for Fish Biodiversity Assessment in a Natural Freshwater System

(2016) Raphaël Civade et al.   PLoS One

Error filtering, pair assembly and error correction for next-generation sequencing reads

(2015) Robert C. Edgar et al.   BIOINFORMATICS

Choice of capture and extraction methods affect detection of freshwater biodiversity from environmental DNA

(2015) Kristy Deiner et al.   BIOLOGICAL CONSERVATION

Using environmental DNA methods to improve detectability in a hellbender (Cryptobranchus alleganiensis) monitoring program

(2015) Stephen F. Spear et al.   BIOLOGICAL CONSERVATION

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

The ecology of environmental DNA and implications for conservation genetics

(2015) Matthew A. Barnes et al.   CONSERVATION GENETICS

Fishing in the Water: Effect of Sampled Water Volume on Environmental DNA-Based Detection of Macroinvertebrates

(2015) Elvira Mächler et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

A basin-scale application of environmental DNA assessment for rare endemic species and closely related exotic species in rivers: a case study of giant salamanders in Japan

(2015) Sou Fukumoto et al.   JOURNAL OF APPLIED ECOLOGY

Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA

(2015) Jesse A. Port et al.   MOLECULAR ECOLOGY

A novel environmental DNA approach to quantify the cryptic invasion of non-native genotypes

(2015) Kimiko Uchii et al.   Molecular Ecology Resources

Optimizing techniques to capture and extract environmental DNA for detection and quantification of fish

(2015) Jessica J. Eichmiller et al.   Molecular Ecology Resources

Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding

(2015) Nathan T. Evans et al.   Molecular Ecology Resources

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

(2015) M. Miya et al.   Royal Society Open Science

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

(2014) Gentile F. Ficetola et al.   Molecular Ecology Resources

Parsing ecological signal from noise in next generation amplicon sequencing

(2014) Nhu H. Nguyen et al.   NEW PHYTOLOGIST

Transport Distance of Invertebrate Environmental DNA in a Natural River

(2014) Kristy Deiner et al.   PLoS One

Using Environmental DNA to Census Marine Fishes in a Large Mesocosm

(2014) Ryan P. Kelly et al.   PLoS One

Assessing Environmental DNA Detection in Controlled Lentic Systems

(2014) Gregory R. Moyer et al.   PLoS One

Persistence of DNA in Carcasses, Slime and Avian Feces May Affect Interpretation of Environmental DNA Data

(2014) Christopher M. Merkes et al.   PLoS One

Particle size distribution and optimal capture of aqueous macrobial eDNA

(2014) Cameron R. Turner et al.   Methods in Ecology and Evolution

Using Environmental DNA to Estimate the Distribution of an Invasive Fish Species in Ponds

(2013) Teruhiko Takahara et al.   PLoS One

An eDNA approach to detect eastern hellbenders (Cryptobranchus a. alleganiensis) using samples of water

(2013) Zachary H. Olson et al.   WILDLIFE RESEARCH

Environmental DNA as a new method for early detection of New Zealand mudsnails (Potamopyrgus antipodarum)

(2013) Caren S. Goldberg et al.   Freshwater Science

Estimation of Fish Biomass Using Environmental DNA

(2012) Teruhiko Takahara et al.   PLoS One

From molecules to management: Adopting DNA-based methods for monitoring biological invasions in aquatic environments

(2011) John A. Darling et al.   ENVIRONMENTAL RESEARCH

Surveillance of fish species composition using environmental DNA

(2011) Toshifumi Minamoto et al.   LIMNOLOGY

Monitoring endangered freshwater biodiversity using environmental DNA

(2011) PHILIP FRANCIS THOMSEN et al.   MOLECULAR ECOLOGY

“Sight-unseen” detection of rare aquatic species using environmental DNA

(2011) Christopher L. Jerde et al.   Conservation Letters

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Species detection using environmental DNA from water samples

(2008) G. F. Ficetola et al.   Biology Letters