Novel cultivated endophytic Verrucomicrobia reveal deep-rooting traits of bacteria to associate with plants
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Novel cultivated endophytic Verrucomicrobia reveal deep-rooting traits of bacteria to associate with plants
Authors
Keywords
-
Journal
Scientific Reports
Volume 10, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-05-26
DOI
10.1038/s41598-020-65277-6
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Assembly of root-associated microbiomes of typical rice cultivars in response to lindane pollution
- (2019) Jiayin Feng et al. ENVIRONMENT INTERNATIONAL
- dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
- (2018) Han Zhang et al. NUCLEIC ACIDS RESEARCH
- Ereboglobus luteus gen. nov. sp. nov. from cockroach guts, and new insights into the oxygen relationship of the genera Opitutus and Didymococcus ( Verrucomicrobia : Opitutaceae )
- (2018) Dorothee Tegtmeier et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Bacterial Production of Indole Related Compounds Reveals Their Role in Association Between Duckweeds and Endophytes
- (2018) Sarah Gilbert et al. Frontiers in Chemistry
- Enrichment of Verrucomicrobia, Actinobacteria and Burkholderiales drives selection of bacterial community from soil by maize roots in a traditional milpa agroecosystem
- (2018) Eneas Aguirre-von-Wobeser et al. PLoS One
- Genomic features of bacterial adaptation to plants
- (2017) Asaf Levy et al. NATURE GENETICS
- Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes
- (2017) Shaomei He et al. mSphere
- Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis
- (2016) Sagar M. Utturkar et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum
- (2016) Stefan Spring et al. ISME Journal
- MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
- (2016) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- NCBI prokaryotic genome annotation pipeline
- (2016) Tatiana Tatusova et al. NUCLEIC ACIDS RESEARCH
- Roots Shaping Their Microbiome: Global Hotspots for Microbial Activity
- (2015) Barbara Reinhold-Hurek et al. Annual Review of Phytopathology
- JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison
- (2015) Michael Richter et al. BIOINFORMATICS
- The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes
- (2015) Pablo R. Hardoim et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Functional overlap of the Arabidopsis leaf and root microbiota
- (2015) Yang Bai et al. NATURE
- Rice responds to endophytic colonization which is independent of the common symbiotic signaling pathway
- (2015) Xi Chen et al. NEW PHYTOLOGIST
- Structure, variation, and assembly of the root-associated microbiomes of rice
- (2015) Joseph Edwards et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa
- (2015) S. L. Lebeis et al. SCIENCE
- CVTree3 Web Server for Whole-genome-based and Alignment-free Prokaryotic Phylogeny and Taxonomy
- (2015) Guanghong Zuo et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Widespread Signals of Convergent Adaptation to High Altitude in Asia and America
- (2014) Matthieu Foll et al. AMERICAN JOURNAL OF HUMAN GENETICS
- On K-peptide length in composition vector phylogeny of prokaryotes
- (2014) Guanghong Zuo et al. COMPUTATIONAL BIOLOGY AND CHEMISTRY
- Terrimicrobium sacchariphilum gen. nov., sp. nov., an anaerobic bacterium of the class 'Spartobacteria' in the phylum Verrucomicrobia, isolated from a rice paddy field
- (2014) Y.-L. Qiu et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
- (2014) M. Kim et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
- (2014) Pablo Yarza et al. NATURE REVIEWS MICROBIOLOGY
- The Origin and Early Evolution of Roots
- (2014) P. Kenrick et al. PLANT PHYSIOLOGY
- GHOSTX: An Improved Sequence Homology Search Algorithm Using a Query Suffix Array and a Database Suffix Array
- (2014) Shuji Suzuki et al. PLoS One
- Insights into the phylogeny and coding potential of microbial dark matter
- (2013) Christian Rinke et al. NATURE
- The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
- (2013) Ross Overbeek et al. NUCLEIC ACIDS RESEARCH
- Diversity and heritability of the maize rhizosphere microbiome under field conditions
- (2013) J. A. Peiffer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States
- (2013) N. Fierer et al. SCIENCE
- A proposal for isolating and testing phosphate-solubilizing bacteria that enhance plant growth
- (2012) Yoav Bashan et al. BIOLOGY AND FERTILITY OF SOILS
- Flagella Mediate Endophytic Competence Rather Than Act as MAMPS in Rice–Azoarcussp. Strain BH72 Interactions
- (2012) Anna Buschart et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
- (2012) Davide Bulgarelli et al. NATURE
- Living inside plants: bacterial endophytes
- (2011) Barbara Reinhold-Hurek et al. CURRENT OPINION IN PLANT BIOLOGY
- Verrucomicrobia subdivision 1 strains display a difference in the colonization of the leek (Allium porrum) rhizosphere
- (2011) Ulisses Nunes da Rocha et al. FEMS MICROBIOLOGY ECOLOGY
- Rice root-associated bacteria: insights into community structures across 10 cultivars
- (2011) Pablo Rodrigo Hardoim et al. FEMS MICROBIOLOGY ECOLOGY
- Functional Characteristics of an Endophyte Community Colonizing Rice Roots as Revealed by Metagenomic Analysis
- (2011) A. Sessitsch et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- The under-recognized dominance of Verrucomicrobia in soil bacterial communities
- (2011) Gaddy T. Bergmann et al. SOIL BIOLOGY & BIOCHEMISTRY
- Application of Molecular Techniques To Elucidate the Influence of Cellulosic Waste on the Bacterial Community Structure at a Simulated Low-Level-Radioactive-Waste Site
- (2010) E. K. Field et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Sinorhizobium melilotiRequires a Cobalamin-Dependent Ribonucleotide Reductase for Symbiosis With Its Plant Host
- (2010) Michiko E. Taga et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes
- (2009) Kuo-Chang Lee et al. BMC MICROBIOLOGY
- Microbiomic Comparison of the Intestine of the Earthworm Eisenia fetida Fed Ergovaline
- (2009) Rogan M. Rattray et al. CURRENT MICROBIOLOGY
- A changing of the guard
- (2009) Philip Hugenholtz et al. ENVIRONMENTAL MICROBIOLOGY
- Phylogenetic and metagenomic analysis of Verrucomicrobiaâin former âagricultural grassland soil
- (2009) Anna Kielak et al. FEMS MICROBIOLOGY ECOLOGY
- Cultivation of hitherto-uncultured bacteria belonging to the Verrucomicrobia subdivision 1 from the potato (Solanum tuberosum L.) rhizosphere
- (2009) Ulisses Nunes da Rocha et al. JOURNAL OF SOILS AND SEDIMENTS
- Shifting the genomic gold standard for the prokaryotic species definition
- (2009) Michael Richter et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Biochemical and genomic comparison of inorganic phosphate solubilization in Pseudomonas species
- (2009) Simon H. Miller et al. Environmental Microbiology Reports
- Genome-wide analysis of the interaction between the endosymbiotic bacterium Wolbachia and its Drosophila host
- (2008) Zhiyong Xi et al. BMC GENOMICS
- The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
- (2008) J. R. Cole et al. NUCLEIC ACIDS RESEARCH
- Endophytic cyanobacteria in a 400-million-yr-old land plant: A scenario for the origin of a symbiosis?
- (2008) Michael Krings et al. REVIEW OF PALAEOBOTANY AND PALYNOLOGY
- Embedding mRNA Stability in Correlation Analysis of Time-Series Gene Expression Data
- (2008) Lorenzo Farina et al. PLoS Computational Biology
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started