Artificial microbiome heterogeneity spurs six practical action themes and examples to increase study power-driven reproducibility
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Artificial microbiome heterogeneity spurs six practical action themes and examples to increase study power-driven reproducibility
Authors
Keywords
-
Journal
Scientific Reports
Volume 10, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-03-19
DOI
10.1038/s41598-020-60900-y
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Dietary Fructooligosaccharide and Glucomannan Alter Gut Microbiota and Improve Bone Metabolism in Senescence-Accelerated Mouse
- (2019) Kenichi Tanabe et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- Limited Effects of Low-to-Moderate Aerobic Exercise on the Gut Microbiota of Mice Subjected to a High-Fat Diet
- (2019) Filipe M. Ribeiro et al. Nutrients
- Endogenous Enterobacteriaceae underlie variation in susceptibility to Salmonella infection
- (2019) Eric M. Velazquez et al. Nature Microbiology
- A Preventive Prebiotic Supplementation Improves the Sweet Taste Perception in Diet-Induced Obese Mice
- (2019) Arnaud Bernard et al. Nutrients
- Dietary Protein Intake Level Modulates Mucosal Healing and Mucosa-Adherent Microbiota in Mouse Model of Colitis
- (2019) Sandra Vidal-Lletjós et al. Nutrients
- Inhibition of Tumor Growth by Dietary Indole-3-Carbinol in a Prostate Cancer Xenograft Model May Be Associated with Disrupted Gut Microbial Interactions
- (2019) Yanbei Wu et al. Nutrients
- Resistant Starch Attenuates Bone Loss in Ovariectomised Mice by Regulating the Intestinal Microbiota and Bone-Marrow Inflammation
- (2019) Yuko Tousen et al. Nutrients
- A More Robust Gut Microbiota in Calorie-Restricted Mice Is Associated with Attenuated Intestinal Injury Caused by the Chemotherapy Drug Cyclophosphamide
- (2019) Tao Liu et al. mBio
- Jamun (Eugenia jambolana Lam.) Fruit Extract Prevents Obesity by Modulating the Gut Microbiome in High-Fat-Diet-Fed Mice
- (2019) Jialin Xu et al. MOLECULAR NUTRITION & FOOD RESEARCH
- Momordica charantia (bitter melon) modulates adipose tissue inflammasome gene expression and adipose-gut inflammatory crosstalk in high-fat diet (HFD)-fed mice
- (2019) Pratibha V. Nerurkar et al. JOURNAL OF NUTRITIONAL BIOCHEMISTRY
- Supplementation with dairy matrices impacts on homocysteine levels and gut microbiota composition of hyperhomocysteinemic mice
- (2019) Paola Zinno et al. EUROPEAN JOURNAL OF NUTRITION
- Microbiome diurnal rhythmicity and its impact on host physiology and disease risk
- (2019) Samuel Philip Nobs et al. EMBO REPORTS
- Immune Tolerance Attenuates Gut Dysbiosis, Dysregulated Uterine Gene Expression and High-Fat Diet Potentiated Preterm Birth in Mice
- (2019) Clarence R. Manuel et al. AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY
- Human Salivary Amylase Gene Copy Number Impacts Oral and Gut Microbiomes
- (2019) Angela C. Poole et al. Cell Host & Microbe
- Institutional protocols for the oral administration (gavage) of chemicals and microscopic microbial communities to mice: Analytical consensus
- (2019) Alexander Rodriguez-Palacios et al. EXPERIMENTAL BIOLOGY AND MEDICINE
- High dietary fat intake lowers serum equol concentration and promotes prostate carcinogenesis in a transgenic mouse prostate model
- (2019) Yufei Liu et al. Nutrition & Metabolism
- Preventive Effects and Mechanisms of Garlic on Dyslipidemia and Gut Microbiome Dysbiosis
- (2019) Keyu Chen et al. Nutrients
- Comparison of Co-housing and Littermate Methods for Microbiota Standardization in Mouse Models
- (2019) Susan J. Robertson et al. Cell Reports
- Effect of raw potato starch on the gut microbiome and metabolome in mice
- (2019) So-Jung Bang et al. INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
- Human Gut Microbiome Transplantation in Ileitis Prone Mice: A Tool for the Functional Characterization of the Microbiota in Inflammatory Bowel Disease Patients
- (2019) Abigail R Basson et al. INFLAMMATORY BOWEL DISEASES
- Neutralization of IL-1α ameliorates Crohn’s disease-like ileitis by functional alterations of the gut microbiome
- (2019) Paola Menghini et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Suppression of gut dysbiosis reverses Western diet-induced vascular dysfunction
- (2018) Micah L. Battson et al. AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM
- In utero and lactational exposure to BDE-47 promotes obesity development in mouse offspring fed a high-fat diet: impaired lipid metabolism and intestinal dysbiosis
- (2018) Dezhen Wang et al. ARCHIVES OF TOXICOLOGY
- Maternal metabolic, immune, and microbial systems in late pregnancy vary with malnutrition in mice†
- (2018) Kristin L Connor et al. BIOLOGY OF REPRODUCTION
- Small Intestine Microbiota Regulate Host Digestive and Absorptive Adaptive Responses to Dietary Lipids
- (2018) Kristina Martinez-Guryn et al. Cell Host & Microbe
- Loss of angiopoietin-like 4 (ANGPTL4) in mice with diet-induced obesity uncouples visceral obesity from glucose intolerance partly via the gut microbiota
- (2018) Aafke W. F. Janssen et al. DIABETOLOGIA
- Food withdrawal alters the gut microbiota and metabolome in mice
- (2018) Xiaojiao Zheng et al. FASEB JOURNAL
- The Artificial Sweetener Splenda Promotes Gut Proteobacteria, Dysbiosis, and Myeloperoxidase Reactivity in Crohn’s Disease–Like Ileitis
- (2018) Alexander Rodriguez-Palacios et al. INFLAMMATORY BOWEL DISEASES
- Colonic aberrant crypt formation accompanies an increase of opportunistic pathogenic bacteria in C57BL/6 mice fed a high-fat diet
- (2018) Huawei Zeng et al. JOURNAL OF NUTRITIONAL BIOCHEMISTRY
- Tomato Powder Inhibits Hepatic Steatosis and Inflammation Potentially Through Restoring SIRT1 Activity and Adiponectin Function Independent of Carotenoid Cleavage Enzymes in Mice
- (2018) Cheng-Chung Li et al. MOLECULAR NUTRITION & FOOD RESEARCH
- Helminth infection in mice improves insulin sensitivity via modulation of gut microbiota and fatty acid metabolism
- (2018) Fernanda Pace et al. PHARMACOLOGICAL RESEARCH
- A combination of Lactobacillus mali APS1 and dieting improved the efficacy of obesity treatment via manipulating gut microbiome in mice
- (2018) Yung-Tsung Chen et al. Scientific Reports
- ‘Cyclical Bias’ in Microbiome Research Revealed by A Portable Germ-Free Housing System Using Nested Isolation
- (2018) Alexander Rodriguez-Palacios et al. Scientific Reports
- Acclimation and Institutionalization of the Mouse Microbiota Following Transportation
- (2018) Dan R. Montonye et al. Frontiers in Microbiology
- Minimizing confounders and increasing data quality in murine models for studies of the gut microbiome
- (2018) Jun Miyoshi et al. PeerJ
- Predominant gut Lactobacillus murinus strain mediates anti-inflammaging effects in calorie-restricted mice
- (2018) Fengwei Pan et al. Microbiome
- Internal and external validity: can you apply research study results to your patients?
- (2018) Cecilia Maria Patino et al. Jornal Brasileiro de Pneumologia
- The influence of caging, bedding, and diet on the composition of the microbiota in different regions of the mouse gut
- (2018) Aaron C. Ericsson et al. Scientific Reports
- Development of outbred CD1 mouse colonies with distinct standardized gut microbiota profiles for use in complex microbiota targeted studies
- (2018) Marcia L. Hart et al. Scientific Reports
- Role of Bile Acids and GLP-1 in Mediating the Metabolic Improvements of Bariatric Surgery
- (2018) Vance L. Albaugh et al. GASTROENTEROLOGY
- Hypocholesterolemic Effect of the Lignin-Rich Insoluble Residue of Brewer’s Spent Grain in Mice Fed a High-Fat Diet
- (2018) Ghulam Shere Raza et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- Modulation of Gut Microbiota by Lonicera caerulea L. Berry Polyphenols in a Mouse Model of Fatty Liver Induced by High Fat Diet
- (2018) Shusong Wu et al. MOLECULES
- Effects of Taste Signaling Protein Abolishment on Gut Inflammation in an Inflammatory Bowel Disease Mouse Model
- (2018) Ya-Wen Du et al. Jove-Journal of Visualized Experiments
- Microbiota and reproducibility of rodent models
- (2017) Craig L Franklin et al. LAB ANIMAL
- Variable Colonization after Reciprocal Fecal Microbiota Transfer between Mice with Low and High Richness Microbiota
- (2017) Aaron C. Ericsson et al. Frontiers in Microbiology
- Mixed-strain housing for female C57BL/6, DBA/2, and BALB/c mice: validating a split-plot design that promotes refinement and reduction
- (2016) Michael Walker et al. BMC Medical Research Methodology
- Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations
- (2016) Christoph A. Thaiss et al. CELL
- Analysis of factors contributing to variation in the C57BL/6J fecal microbiota across German animal facilities
- (2016) Philipp Rausch et al. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
- Accounting for reciprocal host–microbiome interactions in experimental science
- (2016) Thaddeus S. Stappenbeck et al. NATURE
- Research Methods in Epidemiology
- (2016) David S. Younger et al. NEUROLOGIC CLINICS
- Analyzing Clustered Data: Why and How to Account for Multiple Observations Nested within a Study Participant?
- (2016) Erika L. Moen et al. PLoS One
- What does research reproducibility mean?
- (2016) Steven N. Goodman et al. Science Translational Medicine
- Effects of Diurnal Variation of Gut Microbes and High-Fat Feeding on Host Circadian Clock Function and Metabolism
- (2015) Vanessa Leone et al. Cell Host & Microbe
- Manipulating the Gut Microbiota: Methods and Challenges: Figure 1
- (2015) Aaron C. Ericsson et al. ILAR JOURNAL
- Text recycling: acceptable or misconduct?
- (2014) Stephanie Harriman et al. BMC Medicine
- Making the Most of Clustered Data in Laboratory Animal Research Using Multi-Level Models
- (2014) D. L. Pearl ILAR JOURNAL
- Policy: NIH plans to enhance reproducibility
- (2014) Francis S. Collins et al. NATURE
- Preclinical research: Make mouse studies work
- (2014) Steve Perrin NATURE
- Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model
- (2013) Jonathan McCafferty et al. ISME Journal
- Bibliometric Evidence for a Hierarchy of the Sciences
- (2013) Daniele Fanelli et al. PLoS One
- NIH Image to ImageJ: 25 years of image analysis
- (2012) Caroline A Schneider et al. NATURE METHODS
- Gut Microbiota Composition Is Correlated to Grid Floor Induced Stress and Behavior in the BALB/c Mouse
- (2012) Katja Maria Bangsgaard Bendtsen et al. PLoS One
- A Study of Clustered Data and Approaches to Its Analysis
- (2010) S. Galbraith et al. JOURNAL OF NEUROSCIENCE
- Improving Bioscience Research Reporting: The ARRIVE Guidelines for Reporting Animal Research
- (2010) Carol Kilkenny et al. PLOS BIOLOGY
- Issues in Outcomes Research: An Overview of Randomization Techniques for Clinical Trials
- (2009) Minsoo Kang et al. JOURNAL OF ATHLETIC TRAINING
- Individual housing of mice — Impact on behaviour and stress responses
- (2009) Saskia S. Arndt et al. PHYSIOLOGY & BEHAVIOR
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreDiscover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversation