Bacterial analysis in the early developmental stages of the black tiger shrimp (Penaeus monodon)

Dynamics of the gut microbiota in developmental stages of Litopenaeus vannamei reveal its association with body weight

(2019) Jiqiang Fan et al.   Scientific Reports

Investigation of the Potential Effects of Host Genetics and Probiotic Treatment on the Gut Bacterial Community Composition of Aquaculture-raised Pacific Whiteleg Shrimp, Litopenaeus vannamei

(2019) Angela Landsman et al.   Microorganisms

Factors affecting the composition of the gut microbiota, and its modulation

(2019) Nihal Hasan et al.   PeerJ

A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals

(2019) Petar Scepanovic et al.   Microbiome

Survival improvement conferred by the Pseudoalteromonas sp. NC201 probiotic in Litopenaeus stylirostris exposed to Vibrio nigripulchritudo infection and salinity stress

(2018) Sorieul Louis et al.   AQUACULTURE

LPSN – List of Prokaryotic names with Standing in Nomenclature (bacterio.net), 20 years on

(2018) Aidan C. Parte   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Gut bacterial and fungal communities of the domesticated silkworm (Bombyx mori) and wild mulberry-feeding relatives

(2018) Bosheng Chen et al.   ISME Journal

How should we estimate diversity in the fossil record? Testing richness estimators using sampling-standardised discovery curves

(2018) Roger A. Close et al.   Methods in Ecology and Evolution

The Gut Microbiota of Marine Fish

(2018) Sian Egerton et al.   Frontiers in Microbiology

Environment dominates over host genetics in shaping human gut microbiota

(2018) Daphna Rothschild et al.   NATURE

First insight into microbiome profile of fungivorous thrips Hoplothrips carpathicus (Insecta: Thysanoptera) at different developmental stages: molecular evidence of Wolbachia endosymbiosis

(2018) Agnieszka Kaczmarczyk et al.   Scientific Reports

A meta-analysis reveals the environmental and host factors shaping the structure and function of the shrimp microbiota

(2018) Fernanda Cornejo-Granados et al.   PeerJ

Bacterial Epibiotic Communities of Ubiquitous and Abundant Marine Diatoms Are Distinct in Short- and Long-Term Associations

(2018) Klervi Crenn et al.   Frontiers in Microbiology

Microbiota comparison of Pacific white shrimp intestine and sediment at freshwater and marine cultured environment

(2018) Lanfen Fan et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Gut microbiota: Role in pathogen colonization, immune responses, and inflammatory disease

(2017) Joseph M. Pickard et al.   IMMUNOLOGICAL REVIEWS

Bacterial Community Associated with Healthy and Diseased Pacific White Shrimp (Litopenaeus vannamei) Larvae and Rearing Water across Different Growth Stages

(2017) Yanfen Zheng et al.   Frontiers in Microbiology

Development of the gut microbiota in infancy and its impact on health in later life

(2017) Masaru Tanaka et al.   ALLERGOLOGY INTERNATIONAL

Microbiome Dynamics in a Shrimp Grow-out Pond with Possible Outbreak of Acute Hepatopancreatic Necrosis Disease

(2017) Wei-Yu Chen et al.   Scientific Reports

Microbiome of Pacific Whiteleg shrimp reveals differential bacterial community composition between Wild, Aquacultured and AHPND/EMS outbreak conditions

(2017) Fernanda Cornejo-Granados et al.   Scientific Reports

The diversity and distribution of anammox bacteria in the marine aquaculture zones

(2016) Meng Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparison of cultivable bacterial communities associated with Pacific white shrimp (Litopenaeus vannamei) larvae at different health statuses and growth stages

(2016) Yanfen Zheng et al.   AQUACULTURE

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Bacterial dynamics in intestines of the black tiger shrimp and the Pacific white shrimp during Vibrio harveyi exposure

(2016) Wanilada Rungrassamee et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

The microbiome in early life: implications for health outcomes

(2016) Sabrina Tamburini et al.   NATURE MEDICINE

The healthy human microbiome

(2016) Jason Lloyd-Price et al.   Genome Medicine

Effect of dietary components on the gut microbiota of aquatic animals. A never-ending story?

(2015) E. Ringø et al.   AQUACULTURE NUTRITION

The composition of the zebrafish intestinal microbial community varies across development

(2015) W Zac Stephens et al.   ISME Journal

Changes in the intestinal bacterial community during the growth of white shrimp,Litopenaeus vannamei

(2014) Zhaobin Huang et al.   AQUACULTURE RESEARCH

Role of the Microbiota in Immunity and Inflammation

(2014) Yasmine Belkaid et al.   CELL

Characterization of Intestinal Bacteria in Wild and Domesticated Adult Black Tiger Shrimp (Penaeus monodon)

(2014) Wanilada Rungrassamee et al.   PLoS One

Metamorphosis of a Butterfly-Associated Bacterial Community

(2014) Tobin J. Hammer et al.   PLoS One

The Intestinal Microbiome in Early Life: Health and Disease

(2014) Marie-Claire Arrieta et al.   Frontiers in Immunology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Review: Developments in the use of probiotics for disease control in aquaculture

(2013) A. Newaj-Fyzul et al.   AQUACULTURE

Gut homeostasis in a microbial world: insights from Drosophila melanogaster

(2013) Nicolas Buchon et al.   NATURE REVIEWS MICROBIOLOGY

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Bacterial Population in Intestines of the Black Tiger Shrimp (Penaeus monodon) under Different Growth Stages

(2013) Wanilada Rungrassamee et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Evidence for a core gut microbiota in the zebrafish

(2011) Guus Roeselers et al.   ISME Journal

Improvement of phylum- and class-specific primers for real-time PCR quantification of bacterial taxa

(2011) Tristano Bacchetti De Gregoris et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Bacterial Community Associated with the Intestinal Tract of P. monodon in Commercial Farms

(2011) Sage Chaiyapechara et al.   MICROBIAL ECOLOGY

Host–microbiota interactions within the fish intestinal ecosystem

(2010) T Pérez et al.   Mucosal Immunology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Extracellular proteases and possible disease related virulence mechanisms of two marine bacteria implicated in an opportunistic bacterial infection of Nephrops norvegicus

(2008) I.D. Ridgway et al.   JOURNAL OF INVERTEBRATE PATHOLOGY