The microbiome in early life: implications for health outcomes

Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans

(2016) Tommi Vatanen et al.   CELL

Maternal Antibiotic Treatment Impacts Development of the Neonatal Intestinal Microbiome and Antiviral Immunity

(2016) Gabriela Gonzalez-Perez et al.   JOURNAL OF IMMUNOLOGY

Normalizing the environment recapitulates adult human immune traits in laboratory mice

(2016) Lalit K. Beura et al.   NATURE

Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer

(2016) Maria G Dominguez-Bello et al.   NATURE MEDICINE

The effects of antibiotics on the microbiome throughout development and alternative approaches for therapeutic modulation

(2016) Amy Langdon et al.   Genome Medicine

Extensive Modulation of the Fecal Metagenome in Children With Crohn’s Disease During Exclusive Enteral Nutrition

(2015) Christopher Quince et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Probiotics in neonatal intensive care - Back to the future

(2015) Girish Deshpande et al.   AUSTRALIAN & NEW ZEALAND JOURNAL OF OBSTETRICS & GYNAECOLOGY

Oligosaccharides in infant formula: more evidence to validate the role of prebiotics

(2015) Yvan Vandenplas et al.   BRITISH JOURNAL OF NUTRITION

Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

(2015) Fredrik Bäckhed et al.   Cell Host & Microbe

Hunt for the origin of allergy - comparing the Finnish and Russian Karelia

(2015) T. Haahtela et al.   CLINICAL AND EXPERIMENTAL ALLERGY

Engineering the Microbiome: a Novel Approach to Immunotherapy for Allergic and Immune Diseases

(2015) Nan Shen et al.   CURRENT ALLERGY AND ASTHMA REPORTS

Fecal Microbiota Transplantation for Ulcerative Colitis: Not Just Yet

(2015) Ari M. Grinspan et al.   GASTROENTEROLOGY

Antibiotic use and childhood body mass index trajectory

(2015) B S Schwartz et al.   INTERNATIONAL JOURNAL OF OBESITY

Probiotics for the prevention of allergy: A systematic review and meta-analysis of randomized controlled trials

(2015) Carlos A. Cuello-Garcia et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Use of Antibiotics and Risk of Type 2 Diabetes: A Population-Based Case-Control Study

(2015) Kristian Hallundbæk Mikkelsen et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM

ConStrains identifies microbial strains in metagenomic datasets

(2015) Chengwei Luo et al.   NATURE BIOTECHNOLOGY

Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning

(2015) Brian Cleary et al.   NATURE BIOTECHNOLOGY

Early life dynamics of the human gut virome and bacterial microbiome in infants

(2015) Efrem S Lim et al.   NATURE MEDICINE

Antibiotic Exposure in Infancy and Risk of Being Overweight in the First 24 Months of Life

(2015) A. Saari et al.   PEDIATRICS

Early infancy microbial and metabolic alterations affect risk of childhood asthma

(2015) Marie-Claire Arrieta et al.   Science Translational Medicine

Same Exposure but Two Radically Different Responses to Antibiotics: Resilience of the Salivary Microbiome versus Long-Term Microbial Shifts in Feces

(2015) E. Zaura et al.   mBio

Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment

(2015) Yael R. Nobel et al.   Nature Communications

Preterm gut microbiota and metabolome following discharge from intensive care

(2015) Christopher J. Stewart et al.   Scientific Reports

The microbiome of uncontacted Amerindians

(2015) J. C. Clemente et al.   Science Advances

The vaginal microbiome during pregnancy and the postpartum period in a European population

(2015) David A. MacIntyre et al.   Scientific Reports

Effects of probiotics for the treatment of atopic dermatitis: a meta-analysis of randomized controlled trials

(2014) Soo-Ok Kim et al.   ANNALS OF ALLERGY ASTHMA & IMMUNOLOGY

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Probiotics in human milk and probiotic supplementation in infant nutrition: a workshop report

(2014) Henrike Bergmann et al.   BRITISH JOURNAL OF NUTRITION

Immunoglobulin A Coating Identifies Colitogenic Bacteria in Inflammatory Bowel Disease

(2014) Noah W. Palm et al.   CELL

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences

(2014) Laura M. Cox et al.   CELL

Sphingolipids from a Symbiotic Microbe Regulate Homeostasis of Host Intestinal Natural Killer T Cells

(2014) Dingding An et al.   CELL

The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

(2014) Dirk Gevers et al.   Cell Host & Microbe

Oral, Capsulized, Frozen Fecal Microbiota Transplantation for RelapsingClostridium difficileInfection

(2014) Ilan Youngster et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Combination of oral antibiotics may be effective in severe pediatric ulcerative colitis: A preliminary report

(2014) Dan Turner et al.   Journal of Crohns & Colitis

Probiotics and primary prevention of atopic dermatitis: a meta-analysis of randomized controlled studies

(2014) M. Panduru et al.   JOURNAL OF THE EUROPEAN ACADEMY OF DERMATOLOGY AND VENEREOLOGY

Differences in vaginal microbiome in African American women versus women of European ancestry

(2014) Jennifer M. Fettweis et al.   MICROBIOLOGY-SGM

Duration of Lactation and Risk Factors for Maternal Cardiovascular Disease

(2014) Eleanor Bimla Schwarz et al.   OBSTETRICS AND GYNECOLOGY

Cesarean Section and Chronic Immune Disorders

(2014) A. Sevelsted et al.   PEDIATRICS

Pregnancy's Stronghold on the Vaginal Microbiome

(2014) Marina R. S. Walther-António et al.   PLoS One

Commensal bacteria protect against food allergen sensitization

(2014) A. T. Stefka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Relating the metatranscriptome and metagenome of the human gut

(2014) E. A. Franzosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Preterm labor: One syndrome, many causes

(2014) R. Romero et al.   SCIENCE

Comment on "The placenta harbors a unique microbiome"

(2014) H. J. Kliman   Science Translational Medicine

Antibiotics in fetal and early life and subsequent childhood asthma: nationwide population based study with sibling analysis

(2014) A. K. Ortqvist et al.   BMJ-British Medical Journal

Complex host genetics influence the microbiome in inflammatory bowel disease

(2014) Dan Knights et al.   Genome Medicine

Association of Antibiotics in Infancy With Early Childhood Obesity

(2014) L. Charles Bailey et al.   JAMA Pediatrics

Microbial Exposure in Infancy and Subsequent Appearance of Type 1 Diabetes Mellitus–Associated Autoantibodies

(2014) Suvi M. Virtanen et al.   JAMA Pediatrics

Assessing the association of early life antibiotic prescription with asthma exacerbations, impaired antiviral immunity, and genetic variants in 17q21: a population-based birth cohort study

(2014) Aida Semic-Jusufagic et al.   Lancet Respiratory Medicine

The Intestinal Microbiome in Early Life: Health and Disease

(2014) Marie-Claire Arrieta et al.   Frontiers in Immunology

The composition and stability of the vaginal microbiota of normal pregnant women is different from that of non-pregnant women

(2014) Roberto Romero et al.   Microbiome

Xenobiotics Shape the Physiology and Gene Expression of the Active Human Gut Microbiome

(2013) Corinne Ferrier Maurice et al.   CELL

Mother’s and Offspring’s Use of Antibiotics and Infant Allergy to Cow’s Milk

(2013) Johanna Metsälä et al.   EPIDEMIOLOGY

Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by Caesarean section

(2013) Hedvig E Jakobsson et al.   GUT

Biphasic assembly of the murine intestinal microbiota during early development

(2013) Ida Gisela Pantoja-Feliciano et al.   ISME Journal

Safety, Tolerability, and Clinical Response After Fecal Transplantation in Children and Young Adults With Ulcerative Colitis

(2013) Sachin Kunde et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Effects of Different Complementary Feeding Regimens on Iron Status and Enteric Microbiota in Breastfed Infants

(2013) Nancy F. Krebs et al.   JOURNAL OF PEDIATRICS

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells

(2013) Yukihiro Furusawa et al.   NATURE

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Gut metagenome in European women with normal, impaired and diabetic glucose control

(2013) Fredrik H. Karlsson et al.   NATURE

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Antibiotic exposure in the first two years of life and development of asthma and other allergic diseases by 7.5 yr: A dose-dependent relationship

(2013) Lauren Hoskin-Parr et al.   PEDIATRIC ALLERGY AND IMMUNOLOGY

Pacifier Cleaning Practices and Risk of Allergy Development

(2013) B. Hesselmar et al.   PEDIATRICS

Probiotic Administration in Early Life, Atopy, and Asthma: A Meta-analysis of Clinical Trials

(2013) N. Elazab et al.   PEDIATRICS

Diversified Microbiota of Meconium Is Affected by Maternal Diabetes Status

(2013) Jianzhong Hu et al.   PLoS One

House dust exposure mediates gut microbiome Lactobacillus enrichment and airway immune defense against allergens and virus infection

(2013) K. E. Fujimura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gut Microbiomes of Malawian Twin Pairs Discordant for Kwashiorkor

(2013) M. I. Smith et al.   SCIENCE

The Long-Term Stability of the Human Gut Microbiota

(2013) J. J. Faith et al.   SCIENCE

Cohabiting family members share microbiota with one another and with their dogs

(2013) Se Jin Song et al.   eLife

Breastfeeding and Lung Function at School Age

(2012) Cristian M. Dogaru et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Systematic review and meta-analyses of risk factors for childhood overweight identifiable during infancy

(2012) Stephen Franklin Weng et al.   ARCHIVES OF DISEASE IN CHILDHOOD

Delivery by caesarean section and risk of obesity in preschool age children: a prospective cohort study

(2012) Susanna Y Huh et al.   ARCHIVES OF DISEASE IN CHILDHOOD

The Malassezia Genus in Skin and Systemic Diseases

(2012) G. Gaitanis et al.   CLINICAL MICROBIOLOGY REVIEWS

Probiotics Supplementation During Pregnancy or Infancy for the Prevention of Atopic Dermatitis

(2012) Claudio Pelucchi et al.   EPIDEMIOLOGY

A microbiota signature associated with experimental food allergy promotes allergic sensitization and anaphylaxis

(2012) Magali Noval Rivas et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Host–microbe interactions have shaped the genetic architecture of inflammatory bowel disease

(2012) Luke Jostins et al.   NATURE

Antibiotic Exposure and IBD Development Among Children: A Population-Based Cohort Study

(2012) M. P. Kronman et al.   PEDIATRICS

Proof of Concept of Microbiome-Metabolome Analysis and Delayed Gluten Exposure on Celiac Disease Autoimmunity in Genetically At-Risk Infants

(2012) Maria Sellitto et al.   PLoS One

Interactions Between the Microbiota and the Immune System

(2012) L. V. Hooper et al.   SCIENCE

Complexities of the Uniquely Human Vagina

(2012) S. S. Witkin et al.   Science Translational Medicine

Temporal Dynamics of the Human Vaginal Microbiota

(2012) P. Gajer et al.   Science Translational Medicine

Effect of Nutrient Supplementation on Atopic Dermatitis in Children

(2012) Negar Foolad et al.   JAMA Dermatology

Impact of maternal supplementation with probiotics during pregnancy on atopic eczema in childhood – a meta-analysis

(2011) Katja Doege et al.   BRITISH JOURNAL OF NUTRITION

Childhood overweight after establishment of the gut microbiota: the role of delivery mode, pre-pregnancy weight and early administration of antibiotics

(2011) T A Ajslev et al.   INTERNATIONAL JOURNAL OF OBESITY

Molecular Fingerprints of the Human Fecal Microbiota From 9 to 18 Months Old and the Effect of Fish Oil Supplementation

(2011) Anders Daniel Andersen et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Human Milk Probiotic Lactobacillus fermentum CECT5716 Reduces the Incidence of Gastrointestinal and Upper Respiratory Tract Infections in Infants

(2011) José Maldonado et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Detection of prokaryotic mRNA signifies microbial viability and promotes immunity

(2011) Leif E. Sander et al.   NATURE

Airborne cultivable microflora and microbial transfer in farm buildings and rural dwellings

(2011) A.-C. Normand et al.   OCCUPATIONAL AND ENVIRONMENTAL MEDICINE

Antibiotic Prescribing in Ambulatory Pediatrics in the United States

(2011) A. L. Hersh et al.   PEDIATRICS

The Active Human Gut Microbiota Differs from the Total Microbiota

(2011) Francesc Peris-Bondia et al.   PLoS One

The effects of iron fortification on the gut microbiota in African children: a randomized controlled trial in Côte d'Ivoire

(2010) Michael B Zimmermann et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Antibiotic Exposure by 6 Months and Asthma and Allergy at 6 Years: Findings in a Cohort of 1,401 US Children

(2010) K. R. Risnes et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

Analysis of the Serum Levels of Fungi-Specific Immunoglobulin E in Patients with Allergic Diseases

(2010) Feng-Ying Chang et al.   INTERNATIONAL ARCHIVES OF ALLERGY AND IMMUNOLOGY

Supplementation of Infant Formula With Probiotics and/or Prebiotics: A Systematic Review and Comment by the ESPGHAN Committee on Nutrition

(2010) Christian Braegger et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

The Mucosal Immune System and Its Integration with the Mammary Glands

(2010) Per Brandtzaeg   JOURNAL OF PEDIATRICS

Detection of ureaplasmas by the polymerase chain reaction in the amniotic fluid of patients with cervical insufficiency

(2010) Kyung Joon Oh et al.   JOURNAL OF PERINATAL MEDICINE

Lactobacillus reuteri DSM 17938 in Infantile Colic: A Randomized, Double-Blind, Placebo-Controlled Trial

(2010) F. Savino et al.   PEDIATRICS

Vaginal microbiome of reproductive-age women

(2010) J. Ravel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

(2010) M. G. Dominguez-Bello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of the Oral Fungal Microbiome (Mycobiome) in Healthy Individuals

(2010) Mahmoud A. Ghannoum et al.   PLoS Pathogens

The use of exclusive enteral nutrition for induction of remission in children with Crohn’s disease demonstrates that disease phenotype does not influence clinical remission

(2009) E. BUCHANAN et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria

(2009) Ivaylo I. Ivanov et al.   CELL

Altered early infant gut microbiota in children developing allergy up to 5 years of age

(2009) Y. M. Sjögren et al.   CLINICAL AND EXPERIMENTAL ALLERGY

The vaginal bacterial communities of Japanese women resemble those of women in other racial groups

(2009) Xia Zhou et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Use and Safety of Rifaximin in Children With Inflammatory Bowel Disease

(2009) Pramodha Muniyappa et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Influence of microbial environment on autoimmunity

(2009) Alexander V Chervonsky   NATURE IMMUNOLOGY

Psoriasis

(2009) Frank O. Nestle et al.   NEW ENGLAND JOURNAL OF MEDICINE

THE HIGH RATE OF ADVERSE DRUG EVENTS IN CHILDREN RECEIVING PROLONGED OUTPATIENT PARENTERAL ANTIBIOTIC THERAPY FOR OSTEOMYELITIS

(2009) Dara Faden et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

Epidemiology and causes of preterm birth

(2008) Robert L Goldenberg et al.   LANCET

BifidobacteriumandLactobacillusDNA in the human placenta

(2008) R. Satokari et al.   LETTERS IN APPLIED MICROBIOLOGY

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

Effects of Early Nutritional Interventions on the Development of Atopic Disease in Infants and Children: The Role of Maternal Dietary Restriction, Breastfeeding, Timing of Introduction of Complementary Foods, and Hydrolyzed Formulas

(2008) F. R. Greer et al.   PEDIATRICS

Prolonged Duration of Initial Empirical Antibiotic Treatment Is Associated With Increased Rates of Necrotizing Enterocolitis and Death for Extremely Low Birth Weight Infants

(2008) C. M. Cotten et al.   PEDIATRICS

Microbial Prevalence, Diversity and Abundance in Amniotic Fluid During Preterm Labor: A Molecular and Culture-Based Investigation

(2008) Daniel B. DiGiulio et al.   PLoS One

Is meconium from healthy newborns actually sterile?

(2008) Esther Jiménez et al.   RESEARCH IN MICROBIOLOGY