Linking regional shifts in microbial genome adaptation with surface ocean biogeochemistry
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Title
Linking regional shifts in microbial genome adaptation with surface ocean biogeochemistry
Authors
Keywords
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Journal
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
Volume 375, Issue 1798, Pages 20190254
Publisher
The Royal Society
Online
2020-03-23
DOI
10.1098/rstb.2019.0254
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Note: Only part of the references are listed.- Community-Level Responses to Iron Availability in Open Ocean Planktonic Ecosystems
- (2019) Luigi Caputi et al. GLOBAL BIOGEOCHEMICAL CYCLES
- Convergent estimates of marine nitrogen fixation
- (2019) Wei-Lei Wang et al. NATURE
- Methylphosphonate oxidation in Prochlorococcus supports phosphate acquisition, formate excretion, and carbon assimilation into purines
- (2019) Oscar A. Sosa et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- A nutrient limitation mosaic in the eastern tropical Indian Ocean
- (2019) Benjamin S. Twining et al. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY
- Progress and promise of omics for predicting the impacts of climate change on harmful algal blooms
- (2019) Gwenn M.M. Hennon et al. HARMFUL ALGAE
- Biogeochemical controls of surface ocean phosphate
- (2019) Adam C. Martiny et al. Science Advances
- Ecological Stoichiometry of Ocean Plankton
- (2018) Allison R. Moreno et al. Annual Review of Marine Science
- A trait-based approach to ocean ecology
- (2018) Thomas Kiørboe et al. ICES JOURNAL OF MARINE SCIENCE
- Effects of nutrient enrichment on surface microbial community gene expression in the oligotrophic North Pacific Subtropical Gyre
- (2018) J. C. Robidart et al. ISME Journal
- Carbon and nitrogen productivity during spring in the oligotrophic Indian Ocean along the GO-SHIP IO9N transect
- (2018) Steven E. Baer et al. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY
- Dynamic polyphosphate metabolism in cyanobacteria responding to phosphorus availability
- (2018) Jiying Li et al. ENVIRONMENTAL MICROBIOLOGY
- Parallel phylogeography of Prochlorococcus and Synechococcus
- (2018) Alyssa G. Kent et al. ISME Journal
- Nutrient supply controls particulate elemental concentrations and ratios in the low latitude eastern Indian Ocean
- (2018) Catherine A. Garcia et al. Nature Communications
- Stoichiometry of Prochlorococcus, Synechococcus , and small eukaryotic populations in the western North Atlantic Ocean
- (2017) Steven E. Baer et al. ENVIRONMENTAL MICROBIOLOGY
- Stan: A Probabilistic Programming Language
- (2017) Bob Carpenter et al. Journal of Statistical Software
- Differential effects of nitrate, ammonium, and urea as N sources for microbial communities in the North Pacific Ocean
- (2017) I. N. Shilova et al. LIMNOLOGY AND OCEANOGRAPHY
- Ocean biogeochemistry modeled with emergent trait-based genomics
- (2017) V. J. Coles et al. SCIENCE
- Microdiversity shapes the traits, niche space, and biogeography of microbial taxa
- (2017) Alyse A. Larkin et al. Environmental Microbiology Reports
- How To Live with Phosphorus Scarcity in Soil and Sediment: Lessons from Bacteria
- (2016) Yunuen Tapia-Torres et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Practical Bayesian model evaluation using leave-one-out cross-validation and WAIC
- (2016) Aki Vehtari et al. STATISTICS AND COMPUTING
- Dissolved Fe and Al in the upper 1000 m of the eastern Indian Ocean: A high-resolution transect along 95°E from the Antarctic margin to the Bay of Bengal
- (2015) Maxime M. Grand et al. GLOBAL BIOGEOCHEMICAL CYCLES
- Bridging the gap between omics and earth system science to better understand how environmental change impacts marine microbes
- (2015) Thomas Mock et al. GLOBAL CHANGE BIOLOGY
- Temperature and the biogeography of algal stoichiometry
- (2015) Gabriel Yvon-Durocher et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- Environment and evolutionary history determine the global biogeography of phytoplankton temperature traits
- (2015) Mridul K. Thomas et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- Metatranscriptome analyses indicate resource partitioning between diatoms in the field
- (2015) Harriet Alexander et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Functional group-specific traits drive phytoplankton dynamics in the oligotrophic ocean
- (2015) Harriet Alexander et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A simple nutrient-dependence mechanism for predicting the stoichiometry of marine ecosystems
- (2015) Eric D. Galbraith et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The global ocean microbiome
- (2015) M. A. Moran SCIENCE
- Microbiomes in light of traits: A phylogenetic perspective
- (2015) J. B. H. Martiny et al. SCIENCE
- Structure and function of the global ocean microbiome
- (2015) S. Sunagawa et al. SCIENCE
- Proteobacteria: microbial signature of dysbiosis in gut microbiota
- (2015) Na-Ri Shin et al. TRENDS IN BIOTECHNOLOGY
- Anvi’o: an advanced analysis and visualization platform for ‘omics data
- (2015) A. Murat Eren et al. PeerJ
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Physiology and evolution of nitrate acquisition in Prochlorococcus
- (2014) Paul M Berube et al. ISME Journal
- Implications of streamlining theory for microbial ecology
- (2014) Stephen J Giovannoni et al. ISME Journal
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- The Distribution of Dissolved Iron in the West Atlantic Ocean
- (2014) Micha J. A. Rijkenberg et al. PLoS One
- Accumulation and enhanced cycling of polyphosphate by Sargasso Sea plankton in response to low phosphorus
- (2014) P. Martin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Impact of ocean phytoplankton diversity on phosphate uptake
- (2014) Michael W. Lomas et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages
- (2014) E. A. Ottesen et al. SCIENCE
- Phylogenetic constraints on elemental stoichiometry and resource allocation in heterotrophic marine bacteria
- (2013) Amy E. Zimmerman et al. ENVIRONMENTAL MICROBIOLOGY
- An optimality model of photoadaptation in contrasting aquatic light regimes
- (2013) David Talmy et al. LIMNOLOGY AND OCEANOGRAPHY
- Strong latitudinal patterns in the elemental ratios of marine plankton and organic matter
- (2013) Adam C. Martiny et al. Nature Geoscience
- Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
- (2013) B. K. Swan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis
- (2012) Rex R Malmstrom et al. ISME Journal
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss
- (2012) J. J. Morris et al. mBio
- Quantification of mRNA and protein and integration with protein turnover in a bacterium
- (2011) T. Maier et al. Molecular Systems Biology
- Dynamic model of flexible phytoplankton nutrient uptake
- (2011) J. A. Bonachela et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Metabolic streamlining in an open-ocean nitrogen-fixing cyanobacterium
- (2010) H. James Tripp et al. NATURE
- Ecosystem-specific selection pressures revealed through comparative population genomics
- (2010) M. L. Coleman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Prochlorococcus: Advantages and Limits of Minimalism
- (2009) Frédéric Partensky et al. Annual Review of Marine Science
- Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre
- (2009) Rachel S. Poretsky et al. ENVIRONMENTAL MICROBIOLOGY
- Occurrence of phosphate acquisition genes inProchlorococcuscells from different ocean regions
- (2009) Adam C. Martiny et al. ENVIRONMENTAL MICROBIOLOGY
- Ecological Genomics of Marine Picocyanobacteria
- (2009) D. J. Scanlan et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Widespread metabolic potential for nitrite and nitrate assimilation among Prochlorococcus ecotypes
- (2009) A. C. Martiny et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Uncovering Genes with Divergent mRNA-Protein Dynamics in Streptomyces coelicolor
- (2008) Karthik P. Jayapal et al. PLoS One
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