Bridging the gap between omics and earth system science to better understand how environmental change impacts marine microbes

Metatranscriptome analyses indicate resource partitioning between diatoms in the field

(2015) Harriet Alexander et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The reduced kinome of Ostreococcus tauri: core eukaryotic signalling components in a tractable model species

(2014) Matthew M Hindle et al.   BMC GENOMICS

Multiple environmental controls on phytoplankton growth strategies determine adaptive responses of the N : P ratio

(2014) Stuart J. Daines et al.   ECOLOGY LETTERS

PHENOTYPIC PLASTICITY AND EPIGENETIC MARKING: AN ASSESSMENT OF EVIDENCE FOR GENETIC ACCOMMODATION

(2014) Carl D. Schlichting et al.   EVOLUTION

Genetic indicators of iron limitation in wild populations of Thalassiosira oceanica from the northeast Pacific Ocean

(2014) P Dreux Chappell et al.   ISME Journal

Interaction of light and temperature signalling

(2014) Keara A. Franklin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Gene-centric approach to integrating environmental genomics and biogeochemical models

(2014) Daniel C. Reed et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Centennial changes in North Pacific anoxia linked to tropical trade winds

(2014) C. Deutsch et al.   SCIENCE

Multiple nutrient stresses at intersecting Pacific Ocean biomes detected by protein biomarkers

(2014) M. A. Saito et al.   SCIENCE

Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus

(2014) N. Kashtan et al.   SCIENCE

Translational environmental biology: cell biology informing conservation

(2014) Nikki Traylor-Knowles et al.   TRENDS IN CELL BIOLOGY

Evaluation of In Situ Phytoplankton Growth Rates: A Synthesis of Data from Varied Approaches

(2013) Edward A. Laws   Annual Review of Marine Science

Resurrecting the Ecological Underpinnings of Ocean Plankton Blooms

(2013) Michael J. Behrenfeld et al.   Annual Review of Marine Science

Potential of industrial biotechnology with cyanobacteria and eukaryotic microalgae

(2013) René H Wijffels et al.   CURRENT OPINION IN BIOTECHNOLOGY

The biogeography of marine plankton traits

(2013) Andrew D. Barton et al.   ECOLOGY LETTERS

Evolutionary potential of marine phytoplankton under ocean acidification

(2013) Sinéad Collins et al.   Evolutionary Applications

Winners and losers: Ecological and biogeochemical changes in a warming ocean

(2013) S. Dutkiewicz et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Impacts of ocean acidification on marine organisms: quantifying sensitivities and interaction with warming

(2013) Kristy J. Kroeker et al.   GLOBAL CHANGE BIOLOGY

Global marine bacterial diversity peaks at high latitudes in winter

(2013) Joshua Ladau et al.   ISME Journal

An optimality model of photoadaptation in contrasting aquatic light regimes

(2013) David Talmy et al.   LIMNOLOGY AND OCEANOGRAPHY

Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures

(2013) P. D. Gould et al.   Molecular Systems Biology

Strong latitudinal patterns in the elemental ratios of marine plankton and organic matter

(2013) Adam C. Martiny et al.   Nature Geoscience

Taxon-specific response of marine nitrogen fixers to elevated carbon dioxide concentrations

(2013) David A. Hutchins et al.   Nature Geoscience

Processes and patterns of oceanic nutrient limitation

(2013) C. M. Moore et al.   Nature Geoscience

Plasticity in the proteome ofEmiliania huxleyiCCMP 1516 to extremes of light is highly targeted

(2013) Boyd A. McKew et al.   NEW PHYTOLOGIST

Dissecting the impact of CO2and pH on the mechanisms of photosynthesis and calcification in the coccolithophoreEmiliania huxleyi

(2013) Lennart T. Bach et al.   NEW PHYTOLOGIST

AUREOCHROME1a-Mediated Induction of the Diatom-Specific CyclindsCYC2Controls the Onset of Cell Division in Diatoms (Phaeodactylum tricornutum)

(2013) Marie J.J. Huysman et al.   PLANT CELL

Separate Origins of Ice-Binding Proteins in Antarctic Chlamydomonas Species

(2013) James A. Raymond et al.   PLoS One

Marine Phytoplankton Temperature versus Growth Responses from Polar to Tropical Waters – Outcome of a Scientific Community-Wide Study

(2013) Philip W. Boyd et al.   PLoS One

Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana

(2013) J. Ashworth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid climatic driven shifts of diatoms at high latitudes

(2013) Séverine Alvain et al.   REMOTE SENSING OF ENVIRONMENT

Population size and the rate of evolution

(2013) Robert Lanfear et al.   TRENDS IN ECOLOGY & EVOLUTION

Comparing effective population sizes of dominant marine alphaproteobacteria lineages

(2013) Haiwei Luo et al.   Environmental Microbiology Reports

Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum

(2013) Alaguraj Veluchamy et al.   Nature Communications

The impact of temperature on marine phytoplankton resource allocation and metabolism

(2013) A. Toseland et al.   Nature Climate Change

Global imprint of climate change on marine life

(2013) Elvira S. Poloczanska et al.   Nature Climate Change

Flux Balance Analysis of Cyanobacterial Metabolism: The Metabolic Network of Synechocystis sp. PCC 6803

(2013) Henning Knoop et al.   PLoS Computational Biology

Photophysiological Expressions of Iron Stress in Phytoplankton

(2012) Michael J. Behrenfeld et al.   Annual Review of Marine Science

Using Triple Isotopes of Dissolved Oxygen to Evaluate Global Marine Productivity

(2012) L.W. Juranek et al.   Annual Review of Marine Science

Different selective pressures lead to different genomic outcomes as newly-formed hybrid yeasts evolve

(2012) Jeff S Piotrowski et al.   BMC EVOLUTIONARY BIOLOGY

Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii

(2012) Nanette R Boyle et al.   BMC Systems Biology

Functional traits explain phytoplankton community structure and seasonal dynamics in a marine ecosystem

(2012) Kyle F. Edwards et al.   ECOLOGY LETTERS

PHENOTYPIC PLASTICITY FACILITATES MUTATIONAL VARIANCE, GENETIC VARIANCE, AND EVOLVABILITY ALONG THE MAJOR AXIS OF ENVIRONMENTAL VARIATION

(2012) Jeremy A. Draghi et al.   EVOLUTION

Modelling cyanobacteria: from metabolism to integrative models of phototrophic growth

(2012) R. Steuer et al.   JOURNAL OF EXPERIMENTAL BOTANY

Phytoplankton niches, traits and eco-evolutionary responses to global environmental change

(2012) E Litchman et al.   MARINE ECOLOGY PROGRESS SERIES

The metabolic blueprint of Phaeodactylum tricornutum reveals a eukaryotic Entner-Doudoroff glycolytic pathway

(2012) Michele Fabris et al.   PLANT JOURNAL

Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability

(2012) A. Marchetti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pole-to-pole biogeography of surface and deep marine bacterial communities

(2012) J.-F. Ghiglione et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mixotrophic basis of Atlantic oligotrophic ecosystems

(2012) M. Hartmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Global Pattern of Thermal Adaptation in Marine Phytoplankton

(2012) M. K. Thomas et al.   SCIENCE

Proton channels in algae: reasons to be excited

(2012) Alison R. Taylor et al.   TRENDS IN PLANT SCIENCE

Variation in plastic responses of a globally distributed picoplankton species to ocean acidification

(2012) Elisa Schaum et al.   Nature Climate Change

Genome-Scale Modeling of Light-Driven Reductant Partitioning and Carbon Fluxes in Diazotrophic Unicellular Cyanobacterium Cyanothece sp. ATCC 51142

(2012) Trang T. Vu et al.   PLoS Computational Biology

Chloroplast redox imbalance governs phenotypic plasticity: the “grand design of photosynthesis” revisited

(2012) Norman P.A. Hüner   Frontiers in Plant Science

Microarray data can predict diurnal changes of starch content in the picoalga Ostreococcus

(2011) Oksana Sorokina et al.   BMC Systems Biology

Recent advances in reconstruction and applications of genome-scale metabolic models

(2011) Tae Yong Kim et al.   CURRENT OPINION IN BIOTECHNOLOGY

Can we predict the direction of marine primary production change under global warming?

(2011) J. Taucher et al.   GEOPHYSICAL RESEARCH LETTERS

Biogeographical controls on the marine nitrogen fixers

(2011) F. M. Monteiro et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

Genome-wide metabolic network reconstruction of the picoalga Ostreococcus

(2011) Elias W. Krumholz et al.   JOURNAL OF EXPERIMENTAL BOTANY

Shotgun proteomic analysis of the unicellular alga Ostreococcus tauri

(2011) Thierry Le Bihan et al.   Journal of Proteomics

Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data

(2011) J. Raes et al.   Molecular Systems Biology

Circadian rhythms persist without transcription in a eukaryote

(2011) John S. O’Neill et al.   NATURE

Multiple light inputs to a simple clock circuit allow complex biological rhythms

(2011) Carl Troein et al.   PLANT JOURNAL

A Phosphate-Regulated Promoter for Fine-Tuned and Reversible Overexpression in Ostreococcus: Application to Circadian Clock Functional Analysis

(2011) El Batoul Djouani-Tahri et al.   PLoS One

Modeling Diverse Communities of Marine Microbes

(2010) Michael J. Follows et al.   Annual Review of Marine Science

How zooplankton feed: mechanisms, traits and trade-offs

(2010) Thomas Kiørboe   BIOLOGICAL REVIEWS

Orchestrated transcription of biological processes in the marine picoeukaryote Ostreococcus exposed to light/dark cycles

(2010) Annabelle Monnier et al.   BMC GENOMICS

Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families

(2010) P. V. Patel et al.   GENOME RESEARCH

Biogeochemical fluxes through microzooplankton

(2010) Erik T. Buitenhuis et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Environmental control of open-ocean phytoplankton groups: Now and in the future

(2010) Philip W. Boyd et al.   LIMNOLOGY AND OCEANOGRAPHY

Modelling the effects of chromatic adaptation on phytoplankton community structure in the oligotrophic ocean

(2010) AE Hickman et al.   MARINE ECOLOGY PROGRESS SERIES

Transcriptional response of the model planctomycete Rhodopirellula baltica SH1T to changing environmental conditions

(2009) Patricia Wecker et al.   BMC GENOMICS

Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity

(2009) Sacha Coesel et al.   EMBO REPORTS

Clocks in the Green Lineage: Comparative Functional Analysis of the Circadian Architecture of the Picoeukaryote Ostreococcus

(2009) F. Corellou et al.   PLANT CELL

Choreography of the Transcriptome, Photophysiology, and Cell Cycle of a Minimal Photoautotroph, Prochlorococcus

(2009) Erik R. Zinser et al.   PLoS One

Trait-Based Community Ecology of Phytoplankton

(2008) Elena Litchman et al.   Annual Review of Ecology Evolution and Systematics

Functional metagenomic profiling of nine biomes

(2008) Elizabeth A. Dinsdale et al.   NATURE

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

(2008) Chris Bowler et al.   NATURE

Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation

(2008) A. E. Allen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses

(2008) T. Mock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Expanding Oxygen-Minimum Zones in the Tropical Oceans

(2008) L. Stramma et al.   SCIENCE