From molecules to populations: appreciating and estimating recombination rate variation
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
From molecules to populations: appreciating and estimating recombination rate variation
Authors
Keywords
-
Journal
NATURE REVIEWS GENETICS
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-05-30
DOI
10.1038/s41576-020-0240-1
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- LDJump: Estimating Variable Recombination Rates from Population Genetic Data
- (2019) Philipp Hermann et al. Molecular Ecology Resources
- Identification of recombination hotspots and quantitative trait loci for recombination rate in layer chickens
- (2019) Ziqing Weng et al. Journal of Animal Science and Biotechnology
- Recombination rate variation shapes barriers to introgression across butterfly genomes
- (2019) Simon H. Martin et al. PLOS BIOLOGY
- Factors influencing meiotic recombination revealed by whole-genome sequencing of single sperm
- (2019) Anjali Gupta Hinch et al. SCIENCE
- Fast Estimation of Recombination Rates Using Topological Data Analysis
- (2019) Devon P. Humphreys et al. GENETICS
- Epistatic mutations under divergent selection govern phenotypic variation in the crow hybrid zone
- (2019) Ulrich Knief et al. Nature Ecology & Evolution
- Diversity and Determinants of Meiotic Recombination Landscapes
- (2019) Mateusz Zelkowski et al. TRENDS IN GENETICS
- MRLR: unraveling high-resolution meiotic recombination by linked reads
- (2019) Peng Xu et al. BIOINFORMATICS
- Genome-wide recombination map construction from single individuals using linked-read sequencing
- (2019) Andreea Dréau et al. Nature Communications
- Inference of recombination maps from a single pair of genomes and its application to ancient samples
- (2019) Gustavo V. Barroso et al. PLoS Genetics
- Genome of an iconic Australian bird: High‐quality assembly and linkage map of the superb fairy‐wren ( Malurus cyaneus )
- (2019) Joshua V. Peñalba et al. Molecular Ecology Resources
- Plasticity of Meiotic Recombination Rates in Response to Temperature inArabidopsis
- (2018) Andrew Lloyd et al. GENETICS
- Meta-analysis of chromosome-scale crossover rate variation in eukaryotes and its significance to evolutionary genomics
- (2018) Quiterie Haenel et al. MOLECULAR ECOLOGY
- Natural selection interacts with recombination to shape the evolution of hybrid genomes
- (2018) Molly Schumer et al. SCIENCE
- PRDM9 and Its Role in Genetic Recombination
- (2018) Kenneth Paigen et al. TRENDS IN GENETICS
- Plasticity of Meiotic Recombination Rates in Response to Temperature inArabidopsis
- (2018) Andrew Lloyd et al. GENETICS
- Local Inversion Heterozygosity Alters Recombination throughout the Genome
- (2018) K. Nicole Crown et al. CURRENT BIOLOGY
- Biased inference of selection due to GC-biased gene conversion and the rate of protein evolution in flycatchers when accounting for it
- (2018) Paulina Bolívar et al. MOLECULAR BIOLOGY AND EVOLUTION
- Wolbachia Infection Associated with Increased Recombination in Drosophila
- (2018) Nadia D. Singh G3-Genes Genomes Genetics
- Natural variation and dosage of the HEI10 meiotic E3 ligase controlArabidopsiscrossover recombination
- (2017) Piotr A. Ziolkowski et al. GENES & DEVELOPMENT
- Structural Variation Shapes the Landscape of Recombination in Mouse
- (2017) Andrew P. Morgan et al. GENETICS
- Inferring Recent Demography from Isolation by Distance of Long Shared Sequence Blocks
- (2017) Harald Ringbauer et al. GENETICS
- Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications
- (2017) Matthias H. Weissensteiner et al. GENOME RESEARCH
- A comparison of different algorithms for phasing haplotypes using Holstein cattle genotypes and pedigree data
- (2017) Younes Miar et al. JOURNAL OF DAIRY SCIENCE
- Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow
- (2017) M. Ravinet et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds
- (2017) Takeshi Kawakami et al. MOLECULAR ECOLOGY
- Genomewide patterns of variation in genetic diversity are shared among populations, species and higher-order taxa
- (2017) Nagarjun Vijay et al. MOLECULAR ECOLOGY
- A change of view: homologous recombination at single-molecule resolution
- (2017) Kyle Kaniecki et al. NATURE REVIEWS GENETICS
- Recombination: the good, the bad and the variable
- (2017) Jessica Stapley et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Recombination rate plasticity: revealing mechanisms by design
- (2017) Laurie S. Stevison et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Background selection as null hypothesis in population genomics: insights and challenges from Drosophila studies
- (2017) Josep M. Comeron PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Evolution of recombination rates between sex chromosomes
- (2017) Deborah Charlesworth PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The impact of recombination on human mutation load and disease
- (2017) Isabel Alves et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Variation in recombination frequency and distribution across eukaryotes: patterns and processes
- (2017) Jessica Stapley et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Coevolution between transposable elements and recombination
- (2017) Tyler V. Kent et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Genomic features shaping the landscape of meiotic double-strand-break hotspots in maize
- (2017) Yan He et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Variation in Recombination Rate: Adaptive or Not?
- (2017) Kathryn R. Ritz et al. TRENDS IN GENETICS
- A High-Density Linkage Map Reveals Sexual Dimorphism in Recombination Landscapes in Red Deer ( Cervus elaphus )
- (2017) Susan E. Johnston et al. G3-Genes Genomes Genetics
- Sequencing of Single Pollen Nuclei Reveals Meiotic Recombination Events at Megabase Resolution and Circumvents Segregation Distortion Caused by Postmeiotic Processes
- (2017) Steven Dreissig et al. Frontiers in Plant Science
- Structural Variation Shapes the Landscape of Recombination in Mouse
- (2017) Andrew P. Morgan et al. GENETICS
- Inferring Recent Demography from Isolation by Distance of Long Shared Sequence Blocks
- (2017) Harald Ringbauer et al. GENETICS
- Control of Meiotic Crossovers: From Double-Strand Break Formation to Designation
- (2016) Stephen Gray et al. Annual Review of Genetics
- The Landscape of Mouse Meiotic Double-Strand Break Formation, Processing, and Repair
- (2016) Julian Lange et al. CELL
- The mutation rate in human evolution and demographic inference
- (2016) Aylwyn Scally CURRENT OPINION IN GENETICS & DEVELOPMENT
- Meiotic recombination and genome evolution in plants
- (2016) Cathy Melamed-Bessudo et al. CURRENT OPINION IN PLANT BIOLOGY
- Mammalian Meiotic Recombination: A Toolbox for Genome Evolution
- (2016) Laia Capilla et al. CYTOGENETIC AND GENOME RESEARCH
- Recombination hotspots: Models and tools for detection
- (2016) Prosenjit Paul et al. DNA REPAIR
- Two-Locus Likelihoods Under Variable Population Size and Fine-Scale Recombination Rate Estimation
- (2016) J. A. Kamm et al. GENETICS
- Conserved Genetic Architecture Underlying Individual Recombination Rate Variation in a Wild Population of Soay Sheep ( Ovis aries )
- (2016) Susan E. Johnston et al. GENETICS
- Direct estimate of the rate of germline mutation in a bird
- (2016) Linnéa Smeds et al. GENOME RESEARCH
- Beyond clines: lineages and haplotype blocks in hybrid zones
- (2016) Alisa Sedghifar et al. MOLECULAR ECOLOGY
- Determinants of genetic diversity
- (2016) Hans Ellegren et al. NATURE REVIEWS GENETICS
- Making sense of genomic islands of differentiation in light of speciation
- (2016) Jochen B. W. Wolf et al. NATURE REVIEWS GENETICS
- Recombination Rate Evolution and the Origin of Species
- (2016) Daniel Ortiz-Barrientos et al. TRENDS IN ECOLOGY & EVOLUTION
- The Ecology and Evolutionary Dynamics of Meiotic Drive
- (2016) Anna K. Lindholm et al. TRENDS IN ECOLOGY & EVOLUTION
- Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex
- (2016) Nagarjun Vijay et al. Nature Communications
- Comparative High-Density Linkage Mapping Reveals Conserved Genome Structure but Variation in Levels of Heterochiasmy and Location of Recombination Cold Spots in the Common Frog
- (2016) Gemma Palomar et al. G3-Genes Genomes Genetics
- New Software for the Fast Estimation of Population Recombination Rates (FastEPRR) in the Genomic Era
- (2016) Feng Gao et al. G3-Genes Genomes Genetics
- The Genetic Architecture of Natural Variation in Recombination Rate in Drosophila melanogaster
- (2016) Chad M. Hunter et al. PLoS Genetics
- Conserved Genetic Architecture Underlying Individual Recombination Rate Variation in a Wild Population of Soay Sheep ( Ovis aries )
- (2016) Susan E. Johnston et al. GENETICS
- Single-Cell Whole-Genome Amplification and Sequencing: Methodology and Applications
- (2015) Lei Huang et al. Annual Review of Genomics and Human Genetics
- A medium density genetic map and QTL for behavioral and production traits in Japanese quail
- (2015) Julien Recoquillay et al. BMC GENOMICS
- Heterologous Synapsis and Crossover Suppression in Heterozygotes for a Pericentric Inversion in the Zebra Finch
- (2015) Lucía del Priore et al. CYTOGENETIC AND GENOME RESEARCH
- A Male-Specific Genetic Map of the Microcrustacean Daphnia pulex Based on Single-Sperm Whole-Genome Sequencing
- (2015) S. Xu et al. GENETICS
- Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species
- (2015) J. Wang et al. GENETICS
- Recombining without Hotspots: A Comprehensive Evolutionary Portrait of Recombination in Two Closely Related Species ofDrosophila
- (2015) Caiti S. Smukowski Heil et al. Genome Biology and Evolution
- Evolvability of an Optimal Recombination Rate
- (2015) Alexander E. Lobkovsky et al. Genome Biology and Evolution
- Construction of Ultradense Linkage Maps with Lep-MAP2: Stickleback F2Recombinant Crosses as an Example
- (2015) Pasi Rastas et al. Genome Biology and Evolution
- Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum ofFicedulaflycatchers
- (2015) Reto Burri et al. GENOME RESEARCH
- CodABC: A Computational Framework to Coestimate Recombination, Substitution, and Molecular Adaptation Rates by Approximate Bayesian Computation
- (2015) M. Arenas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Exploring linkage disequilibrium
- (2015) Stuart J. E. Baird Molecular Ecology Resources
- Recombination patterns reveal information about centromere location on linkage maps
- (2015) Morten T. Limborg et al. Molecular Ecology Resources
- DNA Crossover Motifs Associated with Epigenetic Modifications Delineate Open Chromatin Regions in Arabidopsis
- (2015) Shay Shilo et al. PLANT CELL
- Meiotic recombination hotspots - a comparative view
- (2015) Kyuha Choi et al. PLANT JOURNAL
- Crossovers are associated with mutation and biased gene conversion at recombination hotspots
- (2015) Barbara Arbeithuber et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genomic determinants of coral heat tolerance across latitudes
- (2015) G. B. Dixon et al. SCIENCE
- Stable recombination hotspots in birds
- (2015) S. Singhal et al. SCIENCE
- Microfluidics for sperm research
- (2015) Stephanie M. Knowlton et al. TRENDS IN BIOTECHNOLOGY
- Initiation of Meiotic Homologous Recombination: Flexibility, Impact of Histone Modifications, and Chromatin Remodeling
- (2015) Lóránt Székvölgyi et al. Cold Spring Harbor Perspectives in Biology
- Linkage Mapping Reveals Strong Chiasma Interference in Sockeye Salmon: Implications for Interpreting Genomic Data
- (2015) Morten T. Limborg et al. G3-Genes Genomes Genetics
- Elevated Mutation Rate during Meiosis in Saccharomyces cerevisiae
- (2015) Alison Rattray et al. PLoS Genetics
- The kinetochore prevents centromere-proximal crossover recombination during meiosis
- (2015) Nadine Vincenten et al. eLife
- Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools
- (2015) Janna L. Fierst Frontiers in Genetics
- The impact of linked selection on plant genomic variation
- (2014) T. Slotte Briefings in Functional Genomics
- Supergenes and Complex Phenotypes
- (2014) Tanja Schwander et al. CURRENT BIOLOGY
- Highly Variable Recombinational Landscape Modulates Efficacy of Natural Selection in Birds
- (2014) Toni I. Gossmann et al. Genome Biology and Evolution
- Inbreeding and runs of homozygosity: A possible solution to an old problem
- (2014) Ino Curik et al. Livestock Science
- Antagonistic roles of ubiquitin ligase HEI10 and SUMO ligase RNF212 regulate meiotic recombination
- (2014) Huanyu Qiao et al. NATURE GENETICS
- High-Resolution Genetic Map for Understanding the Effect of Genome-Wide Recombination Rate on Nucleotide Diversity in Watermelon
- (2014) Umesh K. Reddy et al. G3-Genes Genomes Genetics
- Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle
- (2014) Jared E. Decker et al. PLoS Genetics
- Lep-MAP: fast and accurate linkage map construction for large SNP datasets
- (2013) Pasi Rastas et al. BIOINFORMATICS
- Recent advances of genome mapping and marker-assisted selection in aquaculture
- (2013) Gen Hua Yue FISH AND FISHERIES
- Replicated high-density genetic maps of two great tit populations reveal fine-scale genomic departures from sex-equal recombination rates
- (2013) K van Oers et al. HEREDITY
- Recombination in the threespine stickleback genome-patterns and consequences
- (2013) Marius Roesti et al. MOLECULAR ECOLOGY
- Ecological genomics of local adaptation
- (2013) Outi Savolainen et al. NATURE REVIEWS GENETICS
- Cytological Studies of Human Meiosis: Sex-Specific Differences in Recombination Originate at, or Prior to, Establishment of Double-Strand Breaks
- (2013) Jennifer R. Gruhn et al. PLoS One
- A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content
- (2012) Flavie Tortereau et al. BMC GENOMICS
- Genome-wide Single-Cell Analysis of Recombination Activity and De Novo Mutation Rates in Human Sperm
- (2012) Jianbin Wang et al. CELL
- Fine-Scale Population Recombination Rates, Hotspots, and Correlates of Recombination in the Medicago truncatula Genome
- (2012) Timothy Paape et al. Genome Biology and Evolution
- Recombination Rates and Genomic Shuffling in Human and Chimpanzee—A New Twist in the Chromosomal Speciation Theory
- (2012) Marta Farré et al. MOLECULAR BIOLOGY AND EVOLUTION
- Loss of DNA methylation affects the recombination landscape in Arabidopsis
- (2012) M. Mirouze et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Population genomic and genome-wide association studies of agroclimatic traits in sorghum
- (2012) G. P. Morris et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Probing Meiotic Recombination and Aneuploidy of Single Sperm Cells by Whole-Genome Sequencing
- (2012) S. Lu et al. SCIENCE
- Recombination Modulates How Selection Affects Linked Sites in Drosophila
- (2012) Suzanne E. McGaugh et al. PLOS BIOLOGY
- Interplay between modifications of chromatin and meiotic recombination hotspots
- (2011) Elsa Brachet et al. BIOLOGY OF THE CELL
- Scrambling Eggs: Meiotic Drive and the Evolution of Female Recombination Rates
- (2011) Yaniv Brandvain et al. GENETICS
- Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species
- (2011) J. W. VAN OOIJEN Genetics Research
- On the bias of recombination fractions, Kosambi's and Haldane's distances based on frequencies of gametes
- (2011) Manfred Huehn GENOME
- Sex-chromosome evolution: recent progress and the influence of male and female heterogamety
- (2011) Hans Ellegren NATURE REVIEWS GENETICS
- Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice
- (2011) M. W. Nachman et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Coalescent patterns for chromosomal inversions in divergent populations
- (2011) R. F. Guerrero et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Similarity in Recombination Rate Estimates Highly Correlates with Genetic Differentiation in Humans
- (2011) Hafid Laayouni et al. PLoS One
- Age-Dependent Recombination Rates in Human Pedigrees
- (2011) Julie Hussin et al. PLoS Genetics
- Contrasting Methods of Quantifying Fine Structure of Human Recombination
- (2010) Andrew G. Clark et al. Annual Review of Genomics and Human Genetics
- Extensive recombination rate variation in the house mouse species complex inferred from genetic linkage maps
- (2010) B. L. Dumont et al. GENOME RESEARCH
- Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution
- (2010) M. Volker et al. GENOME RESEARCH
- Fine-scale recombination rate differences between sexes, populations and individuals
- (2010) Augustine Kong et al. NATURE
- Mammalian recombination hot spots: properties, control and evolution
- (2010) Kenneth Paigen et al. NATURE REVIEWS GENETICS
- Prdm9 Controls Activation of Mammalian Recombination Hotspots
- (2010) E. D. Parvanov et al. SCIENCE
- PRDM9 Is a Major Determinant of Meiotic Recombination Hotspots in Humans and Mice
- (2010) F. Baudat et al. SCIENCE
- How and Why Chromosome Inversions Evolve
- (2010) Mark Kirkpatrick PLOS BIOLOGY
- Biased Gene Conversion and the Evolution of Mammalian Genomic Landscapes
- (2009) Laurent Duret et al. Annual Review of Genomics and Human Genetics
- Partial correlation analysis indicates causal relationships between GC-content, exon density and recombination rate in the human genome
- (2009) Jan Freudenberg et al. BMC BIOINFORMATICS
- GC Content and Recombination: Reassessing the Causal Effects for the Saccharomyces cerevisiae Genome
- (2009) M.-C. Marsolier-Kergoat et al. GENETICS
- The evolution of heterochiasmy: the role of sexual selection and sperm competition in determining sex-specific recombination rates in eutherian mammals
- (2009) JUDITH E. MANK Genetics Research
- Population genomic inference of recombination rates and hotspots
- (2009) Y. Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Positive correlation between recombination rate and nucleotide diversity is shown under domestication selection in the chicken genome
- (2008) Lin Fang et al. CHINESE SCIENCE BULLETIN
- EVOLUTION OF THE GENOMIC RATE OF RECOMBINATION IN MAMMALS
- (2008) Beth L. Dumont et al. EVOLUTION
- The Effects of Recombination Rate on the Distribution and Abundance of Transposable Elements
- (2008) E. S. Dolgin et al. GENETICS
- Confounding between recombination and selection, and the Ped/Pop method for detecting selection
- (2008) P. F. O'Reilly et al. GENOME RESEARCH
- Extreme heterochiasmy and nascent sex chromosomes in European tree frogs
- (2008) L. Berset-Brandli et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Sequence Variants in the RNF212 Gene Associate with Genome-Wide Recombination Rate
- (2008) A. Kong et al. SCIENCE
- The evolution of restricted recombination in sex chromosomes
- (2008) Roberta Bergero et al. TRENDS IN ECOLOGY & EVOLUTION
- RAPID PARASITE ADAPTATION DRIVES SELECTION FOR HIGH RECOMBINATION RATES
- (2007) Marcel Salathé et al. EVOLUTION
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search