Epistatic mutations under divergent selection govern phenotypic variation in the crow hybrid zone

In situ quantification of individual mRNA transcripts in melanocytes discloses gene regulation of relevance to speciation

(2019) Chi-Chih Wu et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Integrating Bayesian genomic cline analyses and association mapping of morphological and ecological traits to dissect reproductive isolation and introgression in a Louisiana Iris hybrid zone

(2018) Cheng-Jung Sung et al.   MOLECULAR ECOLOGY

Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon

(2018) Anna I Vickrey et al.   eLife

Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications

(2017) Matthias H. Weissensteiner et al.   GENOME RESEARCH

Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow

(2017) M. Ravinet et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

hybriddetective : A workflow and package to facilitate the detection of hybridization using genomic data in r

(2017) Brendan F. Wringe et al.   Molecular Ecology Resources

Plumage Genes and Little Else Distinguish the Genomes of Hybridizing Warblers

(2016) David P.L. Toews et al.   CURRENT BIOLOGY

missMDA: A Package for Handling Missing Values in Multivariate Data Analysis

(2016) Julie Josse et al.   Journal of Statistical Software

parallelnewhybrid: an R package for the parallelization of hybrid detection usingnewhybrids

(2016) Brendan F. Wringe et al.   Molecular Ecology Resources

Making sense of genomic islands of differentiation in light of speciation

(2016) Jochen B. W. Wolf et al.   NATURE REVIEWS GENETICS

Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex

(2016) Nagarjun Vijay et al.   Nature Communications

Detecting Genomic Signatures of Natural Selection with Principal Component Analysis: Application to the 1000 Genomes Data

(2015) Nicolas Duforet-Frebourg et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcriptomics of colour patterning and coloration shifts in crows

(2015) J. W. Poelstra et al.   MOLECULAR ECOLOGY

FactoMineR: AnRPackage for Multivariate Analysis

(2015) Sébastien Lê et al.   Journal of Statistical Software

Population genomics of parallel hybrid zones in the mimetic butterflies,H. melpomeneandH. erato

(2014) Nicola J. Nadeau et al.   GENOME RESEARCH

The genomic landscape underlying phenotypic integrity in the face of gene flow in crows

(2014) J. W. Poelstra et al.   SCIENCE

Disputed islands

(2014) E. Pennisi   SCIENCE

Structure and function of Norrin in assembly and activation of a Frizzled 4-Lrp5/6 complex

(2013) J. Ke et al.   GENES & DEVELOPMENT

Alternation of clear-cut colour patterns inCorvuscrow evolution accords with learning-dependent social selection against unusual-looking conspecifics

(2013) Tiziano Londei   IBIS

hzar: hybrid zone analysis using an R software package

(2013) Elizabeth P. Derryberry et al.   Molecular Ecology Resources

Epistasis and quantitative traits: using model organisms to study gene–gene interactions

(2013) Trudy F. C. Mackay   NATURE REVIEWS GENETICS

Alternative forms for genomic clines

(2013) Benjamin M. Fitzpatrick   Ecology and Evolution

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

The genetic differentiation at quantitative trait loci under local adaptation

(2012) VALÉRIE LE CORRE et al.   MOLECULAR ECOLOGY

bgc: Software for Bayesian estimation of genomic clines

(2012) Z. Gompert et al.   Molecular Ecology Resources

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Investigation of Inversion Polymorphisms in the Human Genome Using Principal Components Analysis

(2012) Jianzhong Ma et al.   PLoS One

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

introgress: a software package for mapping components of isolation in hybrids

(2009) ZACHARIAH GOMPERT et al.   Molecular Ecology Resources

A multiple testing correction method for genetic association studies using correlated single nucleotide polymorphisms

(2008) Xiaoyi Gao et al.   GENETIC EPIDEMIOLOGY

An analysis of population genetic differentiation and genotype-phenotype association across the hybrid zone of carrion and hooded crows using microsatellites andMC1R

(2008) FREDRIK HAAS et al.   MOLECULAR ECOLOGY

Speciation through sensory drive in cichlid fish

(2008) Ole Seehausen et al.   NATURE