Spatial Distribution Patterns of Bacterioplankton in the Oxygen Minimum Zone of the Tropical Mexican Pacific

Depth-Dependent Environmental Drivers of Microbial Plankton Community Structure in the Northern Gulf of Mexico

(2019) Cole G. Easson et al.   Frontiers in Microbiology

Microbial ecosystem dynamics drive fluctuating nitrogen loss in marine anoxic zones

(2019) Justin L. Penn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Molecular and isotopic evidence of the distribution of nitrogen-cycling microbial communities in the oxygen minimum zone of the Tropical Mexican Pacific

(2019) Silvia Pajares et al.   FEMS MICROBIOLOGY ECOLOGY

Oxygen modulates bacterial community composition in the coastal upwelling waters off central Chile

(2018) Montserrat Aldunate et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Prokaryotic picoplankton distribution within the oxygen minimum zone of the central Mexican Pacific across environmental gradients

(2018) Zuleima Santana-Vega et al.   BRAZILIAN JOURNAL OF OCEANOGRAPHY

Seasonal succession of small planktonic eukaryotes inhabiting surface waters of a coastal upwelling system

(2018) Marta Hernández-Ruiz et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial niches in marine oxygen minimum zones

(2018) Anthony D. Bertagnolli et al.   NATURE REVIEWS MICROBIOLOGY

A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.)

(2018) Christian Rinke et al.   ISME Journal

Cryptic oxygen cycling in anoxic marine zones

(2017) Emilio Garcia-Robledo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Niche Partitioning of the N Cycling Microbial Community of an Offshore Oxygen Deficient Zone

(2017) Clara A. Fuchsman et al.   Frontiers in Microbiology

Microbe biogeography tracks water masses in a dynamic oceanic frontal system

(2017) Anni Djurhuus et al.   Royal Society Open Science

Microorganisms and ocean global change

(2017) David A. Hutchins et al.   Nature Microbiology

Effect of the oxygen minimum zone on the second chlorophyll maximum

(2017) J Cepeda-Morales   CIENCIAS MARINAS

Primary productivity observations in the eastern tropical Pacific off Cabo Corrientes, Mexico

(2017) DC López-Sandoval   CIENCIAS MARINAS

Characterization of spatial distribution of the bacterial community in the South Sea of Korea

(2017) Ji-Hui Seo et al.   PLoS One

Water Masses and Circulation in the Tropical Pacific off Central Mexico and Surrounding Areas

(2016) Esther Portela et al.   JOURNAL OF PHYSICAL OCEANOGRAPHY

Least-Squares Means: TheRPackagelsmeans

(2016) Russell V. Lenth   Journal of Statistical Software

SAR11 bacteria linked to ocean anoxia and nitrogen loss

(2016) Despina Tsementzi et al.   NATURE

Comparative genomics ofSynechococcusand proposal of the new genusParasynechococcus

(2016) Felipe Coutinho et al.   PeerJ

Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone

(2016) Claudia Lüke et al.   PeerJ

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Distribution pattern of picoplankton carbon biomass linked to mesoscale dynamics in the southern gulf of Mexico during winter conditions

(2015) Lorena Linacre et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone

(2015) Sangita Ganesh et al.   ISME Journal

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Bacterioplankton community shifts associated with epipelagic and mesopelagic waters in the Southern Ocean

(2015) Zheng Yu et al.   Scientific Reports

Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones

(2015) Jennifer B. Glass et al.   Frontiers in Microbiology

Transcriptomic evidence for microbial sulfur cycling in the eastern tropical North Pacific oxygen minimum zone

(2015) Molly T. Carolan et al.   Frontiers in Microbiology

Marine Group II Archaea, potentially important players in the global ocean carbon cycle

(2015) Chuanlun L. Zhang et al.   Frontiers in Microbiology

Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones

(2015) Tim Kalvelage et al.   PLoS One

Oxygen distribution and aerobic respiration in the north and south eastern tropical Pacific oxygen minimum zones

(2014) Laura Tiano et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Master recyclers: features and functions of bacteria associated with phytoplankton blooms

(2014) Alison Buchan et al.   NATURE REVIEWS MICROBIOLOGY

Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing

(2014) Shunsuke Takahashi et al.   PLoS One

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

The mechanisms involved in defining the northern boundary of the shallow oxygen minimum zone in the eastern tropical Pacific Ocean off Mexico

(2013) Jushiro Cepeda-Morales et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Metabolic flexibility of enigmatic SAR324 revealed through metagenomics and metatranscriptomics

(2013) Cody S. Sheik et al.   ENVIRONMENTAL MICROBIOLOGY

High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences

(2013) Kevin L Vergin et al.   ISME Journal

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone

(2013) Sangita Ganesh et al.   ISME Journal

Diversity and Spatial Distribution of Hydrazine Oxidoreductase (hzo) Gene in the Oxygen Minimum Zone Off Costa Rica

(2013) Liangliang Kong et al.   PLoS One

Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus

(2013) P. Flombaum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deoxygenation alters bacterial diversity and community composition in the ocean’s largest oxygen minimum zone

(2013) J. Michael Beman et al.   Nature Communications

Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone

(2012) Jessica A. Bryant et al.   ECOLOGY

Microbial ecology of expanding oxygen minimum zones

(2012) Jody J. Wright et al.   NATURE REVIEWS MICROBIOLOGY

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Microbial oceanography of anoxic oxygen minimum zones

(2012) O. Ulloa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity and Distribution of Marine Synechococcus: Multiple Gene Phylogenies for Consensus Classification and Development of qPCR Assays for Sensitive Measurement of Clades in the Ocean

(2012) Nathan A. Ahlgren et al.   Frontiers in Microbiology

Microbial metatranscriptomics in a permanent marine oxygen minimum zone

(2011) Frank J. Stewart et al.   ENVIRONMENTAL MICROBIOLOGY

Metabolic strategies of free-living and aggregate-associated bacterial communities inferred from biologic and chemical profiles in the Black Sea suboxic zone

(2011) Clara A. Fuchsman et al.   FEMS MICROBIOLOGY ECOLOGY

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

(2011) Chris L Dupont et al.   ISME Journal

Intensive nitrogen loss over the Omani Shelf due to anammox coupled with dissimilatory nitrite reduction to ammonium

(2011) Marlene M Jensen et al.   ISME Journal

Structure and seasonal dynamics of the eukaryotic picophytoplankton community in a wind-driven coastal upwelling ecosystem

(2011) Silvana Collado-Fabbri et al.   LIMNOLOGY AND OCEANOGRAPHY

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Ocean oxygen minima expansions and their biological impacts

(2010) Lothar Stramma et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing

(2010) HÉLÈNE AGOGUÉ et al.   MOLECULAR ECOLOGY

Novel lineages of Prochlorococcus thrive within the oxygen minimum zone of the eastern tropical South Pacific

(2010) Paris Lavin et al.   Environmental Microbiology Reports

Ocean Deoxygenation in a Warming World

(2009) Ralph F. Keeling et al.   Annual Review of Marine Science

Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean

(2009) Martha Schattenhofer et al.   ENVIRONMENTAL MICROBIOLOGY

Temporal variation of Synechococcus clades at a coastal Pacific Ocean monitoring site

(2009) Vera Tai et al.   ISME Journal

Seasonality and vertical structure of microbial communities in an ocean gyre

(2009) Alexander H Treusch et al.   ISME Journal

The genomic basis of trophic strategy in marine bacteria

(2009) F. M. Lauro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Revising the nitrogen cycle in the Peruvian oxygen minimum zone

(2009) P. Lam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones

(2009) D. A. Walsh et al.   SCIENCE

Community structure of marine bacterioplankton: patterns, networks, and relationships to function

(2008) JA Fuhrman et al.   AQUATIC MICROBIAL ECOLOGY

Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific

(2008) Heike Stevens et al.   ENVIRONMENTAL MICROBIOLOGY

A microdiversity study of anammox bacteria reveals a novelCandidatusScalindua phylotype in marine oxygen minimum zones

(2008) Dagmar Woebken et al.   ENVIRONMENTAL MICROBIOLOGY

Taxonomic resolution, ecotypes and the biogeography ofProchlorococcus

(2008) Adam C. Martiny et al.   ENVIRONMENTAL MICROBIOLOGY

A latitudinal diversity gradient in planktonic marine bacteria

(2008) J. A. Fuhrman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Oxygen minimum zones (OMZs) in the modern ocean

(2008) A. Paulmier et al.   PROGRESS IN OCEANOGRAPHY