Microbe biogeography tracks water masses in a dynamic oceanic frontal system

Oceanic fronts: transition zones for bacterioplankton community composition

(2016) Federico Baltar et al.   Environmental Microbiology Reports

Abundance and Distribution of Dimethylsulfoniopropionate Degradation Genes and the Corresponding Bacterial Community Structure at Dimethyl Sulfide Hot Spots in the Tropical and Subtropical Pacific Ocean

(2015) Yingshun Cui et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes

(2015) Jacob A Cram et al.   ISME Journal

Global diversity and biogeography of deep-sea pelagic prokaryotes

(2015) Guillem Salazar et al.   ISME Journal

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Microbial community diversity and physical–chemical features of the Southwestern Atlantic Ocean

(2014) Nelson Alves Junior et al.   ARCHIVES OF MICROBIOLOGY

Microbial Sulfur Cycle in Two Hydrothermal Chimneys on the Southwest Indian Ridge

(2014) H. Cao et al.   mBio

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Variability of particulate flux over the Mid-Atlantic Ridge

(2013) Richard E. Abell et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Beta diversity of marine bacteria depends on temporal scale

(2013) Stephen M. Hatosy et al.   ECOLOGY

Metabolic flexibility of enigmatic SAR324 revealed through metagenomics and metatranscriptomics

(2013) Cody S. Sheik et al.   ENVIRONMENTAL MICROBIOLOGY

Global marine bacterial diversity peaks at high latitudes in winter

(2013) Joshua Ladau et al.   ISME Journal

Vertical ecology of the pelagic ocean: classical patterns and new perspectives

(2013) T. T. Sutton   JOURNAL OF FISH BIOLOGY

Colonization of the deep sea by fishes

(2013) I. G. Priede et al.   JOURNAL OF FISH BIOLOGY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Marine bacteria exhibit a bipolar distribution

(2013) W. J. Sul et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Flow cytometry investigation of picoplankton across latitudes and along the circum Antarctic Ocean

(2012) Ling Lin et al.   ACTA OCEANOLOGICA SINICA

Ocean currents shape the microbiome of Arctic marine sediments

(2012) Leila J Hamdan et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

Is There a Seamount Effect on Microbial Community Structure and Biomass? The Case Study of Seine and Sedlo Seamounts (Northeast Atlantic)

(2012) Ana Mendonça et al.   PLoS One

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Cascade multivariate regression tree: a novel approach for modelling nested explanatory sets

(2012) Marie-Hélène Ouellette et al.   Methods in Ecology and Evolution

The global distribution of seamounts based on 30 arc seconds bathymetry data

(2011) Chris Yesson et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

(2011) Lucie Zinger et al.   PLoS One

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing

(2010) HÉLÈNE AGOGUÉ et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The dynamics of biogeographic ranges in the deep sea

(2010) C. R. McClain et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Ecology of Seamounts: Structure, Function, and Human Impacts

(2009) Malcolm R. Clark et al.   Annual Review of Marine Science

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Hydrography shapes bacterial biogeography of the deep Arctic Ocean

(2009) Pierre E Galand et al.   ISME Journal

Global ecological patterns in uncultured Archaea

(2009) Jean-Christophe Auguet et al.   ISME Journal

Endemicity, Biogeography, Composition, and Community Structure On a Northeast Pacific Seamount

(2009) Craig R. McClain et al.   PLoS One

Community structure of marine bacterioplankton: patterns, networks, and relationships to function

(2008) JA Fuhrman et al.   AQUATIC MICROBIAL ECOLOGY

Seamounts and organic matter—Is there an effect? The case of Sedlo and Seine Seamounts: Part 1. Distributions of dissolved and particulate organic matter

(2008) J.C. Vilas et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

A general framework for the distance-decay of similarity in ecological communities

(2008) Hélène Morlon et al.   ECOLOGY LETTERS

Microbial contributions to climate change through carbon cycle feedbacks

(2008) Richard D Bardgett et al.   ISME Journal

The circulation of the Indian Ocean at 32°S

(2008) Elaine L. McDonagh et al.   PROGRESS IN OCEANOGRAPHY