Nitrogen and water addition regulate soil fungal diversity and co-occurrence networks

Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

(2019) Cameron Wagg et al.   Nature Communications

Higher precipitation strengthens the microbial interactions in semi-arid grassland soils

(2018) Shang Wang et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Plant diversity is coupled with beta not alpha diversity of soil fungal communities following N enrichment in a semi-arid grassland

(2018) Wenqing Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrogen deposition combined with elevated precipitation is conducive to maintaining the stability of the soil fungal diversity on the Stipa baicalensis steppe

(2018) Haifang Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Consistent responses of surface- and subsurface soil fungal diversity to N enrichment are mediated differently by acidification and plant community in a semi-arid grassland

(2018) Wenqing Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil bacterial networks are less stable under drought than fungal networks

(2018) Franciska T. de Vries et al.   Nature Communications

Responses of soil microbial functional genes to global changes are indirectly influenced by aboveground plant biomass variation

(2017) Hui Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant diversity represents the prevalent determinant of soil fungal community structure across temperate grasslands in northern China

(2017) Yong-Liang Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrogen deposition and precipitation induced phylogenetic clustering of arbuscular mycorrhizal fungal communities

(2017) Yong-Liang Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Disentangling Interactions in the Microbiome: A Network Perspective

(2017) Mehdi Layeghifard et al.   TRENDS IN MICROBIOLOGY

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Thirty four years of nitrogen fertilization decreases fungal diversity and alters fungal community composition in black soil in northeast China

(2016) Jing Zhou et al.   SOIL BIOLOGY & BIOCHEMISTRY

Increasing aridity reduces soil microbial diversity and abundance in global drylands

(2015) Fernando T. Maestre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

(2015) Jonathan W. Leff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of nitrogen enrichment on belowground communities in grassland: Relative role of soil nitrogen availability vs. soil acidification

(2015) Dima Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Contrasting soil fungal community responses to experimental nitrogen addition using the large subunit rRNA taxonomic marker and cellobiohydrolase I functional marker

(2014) Rebecca C. Mueller et al.   MOLECULAR ECOLOGY

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Responses of ammonia-oxidizing bacteria and archaea to nitrogen fertilization and precipitation increment in a typical temperate steppe in Inner Mongolia

(2013) Yongliang Chen et al.   APPLIED SOIL ECOLOGY

Sensitivity of grassland plant community composition to spatial vs. temporal variation in precipitation

(2013) Elsa E. Cleland et al.   ECOLOGY

Enhanced nitrogen deposition over China

(2013) Xuejun Liu et al.   NATURE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Microbial community responses to 17 years of altered precipitation are seasonally dependent and coupled to co-varying effects of water content on vegetation and soil C

(2013) Patrick O. Sorensen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Plant Species Richness and Ecosystem Multifunctionality in Global Drylands

(2012) F. T. Maestre et al.   SCIENCE

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies

(2011) Yong Kong   GENOMICS

Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2

(2011) J. Zhou et al.   mBio

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Nitrogen deposition and its ecological impact in China: An overview

(2010) Xuejun Liu et al.   ENVIRONMENTAL POLLUTION

Molecular diversity of fungal communities in agricultural soils from Lower Austria

(2010) Sylvia Klaubauf et al.   FUNGAL DIVERSITY

Fungal community responses to precipitation

(2010) CHRISTINE V. HAWKES et al.   GLOBAL CHANGE BIOLOGY

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Functional Molecular Ecological Networks

(2010) J. Zhou et al.   mBio

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Does grassland vegetation drive soil microbial diversity?

(2009) P. Millard et al.   NUTRIENT CYCLING IN AGROECOSYSTEMS

A projection of future changes in summer precipitation and monsoon in East Asia

(2009) Ying Sun et al.   Science China-Earth Sciences

Evidence for organic N deposition and its anthropogenic sources in China

(2008) Ying Zhang et al.   ATMOSPHERIC ENVIRONMENT

Linkages between plant functional composition, fine root processes and potential soil N mineralization rates

(2008) Dario A. Fornara et al.   JOURNAL OF ECOLOGY

Loss of plant species after chronic low-level nitrogen deposition to prairie grasslands

(2008) Christopher M. Clark et al.   NATURE

Transformation of the Nitrogen Cycle: Recent Trends, Questions, and Potential Solutions

(2008) J. N. Galloway et al.   SCIENCE