Contaminant-Degrading Microorganisms Identified Using Stable Isotope Probing

Using DNA-Stable Isotope Probing to Identify MTBE- and TBA-Degrading Microorganisms in Contaminated Groundwater

(2018) Katherine C. Key et al.   GROUND WATER MONITORING AND REMEDIATION

Assessing BTEX Biodegradation Potential at a Refinery Using Molecular Biological Tools

(2018) Katherine C. Key et al.   GROUND WATER MONITORING AND REMEDIATION

Identification of Benzo[a]pyrene-Metabolizing Bacteria in Forest Soils by Using DNA-Based Stable-Isotope Probing

(2015) Mengke Song et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Elucidating carbon uptake from vinyl chloride using stable isotope probing and Illumina sequencing

(2015) Fernanda Paes et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Stable Isotope Probing and High-Throughput Sequencing ImplicateXanthomonadaceaeandRhodocyclaceaein Ethylbenzene Degradation

(2015) Indumathy Jayamani et al.   ENVIRONMENTAL ENGINEERING SCIENCE

Stable isotope probing reveals the importance of Comamonas and Pseudomonadaceae in RDX degradation in samples from a Navy detonation site

(2015) Indumathy Jayamani et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

The key microorganisms for anaerobic degradation of pentachlorophenol in paddy soil as revealed by stable isotope probing

(2015) Hui Tong et al.   JOURNAL OF HAZARDOUS MATERIALS

Application of 13C and 15N stable isotope probing to characterize RDX degrading microbial communities under different electron-accepting conditions

(2015) Kun-Ching Cho et al.   JOURNAL OF HAZARDOUS MATERIALS

Enhanced microbial degradation of pentachlorophenol from soil in the presence of earthworms: Evidence of functional bacteria using DNA-stable isotope probing

(2015) Xiaomin Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Burkholderiales participating in pentachlorophenol biodegradation in iron-reducing paddy soil as identified by stable isotope probing

(2015) Hui Tong et al.   Environmental Science-Processes & Impacts

Cultivation-dependent and cultivation-independent characterization of hydrocarbon-degrading bacteria in Guaymas Basin sediments

(2015) Tony Gutierrez et al.   Frontiers in Microbiology

Novel Phenanthrene-Degrading Bacteria Identified by DNA-Stable Isotope Probing

(2015) Longfei Jiang et al.   PLoS One

Applications and impacts of stable isotope probing for analysis of microbial interactions

(2014) Wolf-Rainer Abraham   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Identification of toluene degraders in a methanogenic enrichment culture

(2014) S. Jane Fowler et al.   FEMS MICROBIOLOGY ECOLOGY

Magnetic nanoparticle-mediated isolation of functional bacteria in a complex microbial community

(2014) Dayi Zhang et al.   ISME Journal

Importance of soil organic matter for the diversity of microorganisms involved in the degradation of organic pollutants

(2014) Dominik Neumann et al.   ISME Journal

Time-Resolved DNA Stable Isotope Probing Links Desulfobacterales- and Coriobacteriaceae-Related Bacteria to Anaerobic Degradation of Benzene under Methanogenic Conditions

(2014) Mana Noguchi et al.   MICROBES AND ENVIRONMENTS

Metaproteogenomic analysis of a sulfate-reducing enrichment culture reveals genomic organization of key enzymes in the m-xylene degradation pathway and metabolic activity of proteobacteria

(2014) Dragana Bozinovski et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Microbial communities biostimulated by ethanol during uranium (VI) bioremediation in contaminated sediment as shown by stable isotope probing

(2014) Mary Beth Leigh et al.   Frontiers of Environmental Science & Engineering

DNA-based stable isotope probing coupled with cultivation methods implicates Methylophaga in hydrocarbon degradation

(2014) Sara Mishamandani et al.   Frontiers in Microbiology

Biostimulation Reveals Functional Redundancy of Anthracene-Degrading Bacteria in Polycyclic Aromatic Hydrocarbon-Contaminated Soil

(2013) Sage R. Dunlevy et al.   ENVIRONMENTAL ENGINEERING SCIENCE

Metabolic versatility of toluene-degrading, iron-reducing bacteria in tidal flat sediment, characterized by stable isotope probing-based metagenomic analysis

(2013) So-Jeong Kim et al.   ENVIRONMENTAL MICROBIOLOGY

Application of 13C-stable isotope probing to identify RDX-degrading microorganisms in groundwater

(2013) Kun-Ching Cho et al.   ENVIRONMENTAL POLLUTION

Identification of Microbial Populations Assimilating Nitrogen from RDX in Munitions Contaminated Military Training Range Soils by High Sensitivity Stable Isotope Probing

(2013) Peter Andeer et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Analysis of structure, function, and activity of a benzene-degrading microbial community

(2013) Sven Jechalke et al.   FEMS MICROBIOLOGY ECOLOGY

RDX degrading microbial communities and the prediction of microorganisms responsible for RDX bioremediation

(2013) Alison M. Cupples   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Identification of Desulfosporosinus as toluene-assimilating microorganisms from a methanogenic consortium

(2013) Weimin Sun et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology

(2013) Martin von Bergen et al.   ISME Journal

Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP

(2013) Tony Gutierrez et al.   ISME Journal

DNA-SIP Reveals That Syntrophaceae Play an Important Role in Methanogenic Hexadecane Degradation

(2013) Lei Cheng et al.   PLoS One

Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP)

(2013) Florian-Alexander Herbst et al.   PROTEOMICS

RDX Degradation Potential in Soils Previously Unexposed to RDX and the Identification of RDX-Degrading Species in One Agricultural Soil Using Stable Isotope Probing

(2013) Indumathy Jayamani et al.   WATER AIR AND SOIL POLLUTION

Anaerobic Methyltert-Butyl Ether-Degrading Microorganisms Identified in Wastewater Treatment Plant Samples by Stable Isotope Probing

(2012) Weimin Sun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Key players and team play: anaerobic microbial communities in hydrocarbon-contaminated aquifers

(2012) Sabine Kleinsteuber et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Stable isotope probing in the metagenomics era: A bridge towards improved bioremediation

(2012) Ondrej Uhlik et al.   BIOTECHNOLOGY ADVANCES

Anaerobic benzene degradation under denitrifying conditions: Peptococcaceae as dominant benzene degraders and evidence for a syntrophic process

(2012) Bas M. van der Zaan et al.   ENVIRONMENTAL MICROBIOLOGY

Functional analysis of an anaerobic m-xylene-degrading enrichment culture using protein-based stable isotope probing

(2012) Dragana Bozinovski et al.   FEMS MICROBIOLOGY ECOLOGY

Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi

(2012) F. E. Loffler et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium

(2012) Martin Taubert et al.   ISME Journal

Protein-based stable isotope probing (protein-SIP) in functional metaproteomics

(2012) Jana Seifert et al.   MASS SPECTROMETRY REVIEWS

Identification of Bacteria Utilizing Biphenyl, Benzoate, and Naphthalene in Long-Term Contaminated Soil

(2012) Ondrej Uhlik et al.   PLoS One

Identification of a Toluene-Degrading Bacterium from a Soil Sample through H218O DNA Stable Isotope Probing

(2011) Angela Woods et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Stable Isotope Probing of an Algal Bloom To Identify Uncultivated Members of the Rhodobacteraceae Associated with Low-Molecular-Weight Polycyclic Aromatic Hydrocarbon Degradation

(2011) Tony Gutierrez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Linking Specific Heterotrophic Bacterial Populations to Bioreduction of Uranium and Nitrate in Contaminated Subsurface Sediments by Using Stable Isotope Probing

(2011) Denise M. Akob et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity of Five Anaerobic Toluene-Degrading Microbial Communities Investigated Using Stable Isotope Probing

(2011) Weimin Sun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multiple DNA Extractions Coupled with Stable-Isotope Probing of Anthracene-Degrading Bacteria in Contaminated Soil

(2011) Maiysha D. Jones et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Novel Biphenyl-Oxidizing Bacteria and Dioxygenase Genes from a Korean Tidal Mudflat

(2011) Tae Kwon Lee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of tertiary butyl alcohol (TBA)-utilizing organisms in BioGAC reactors using 13C-DNA stable isotope probing

(2011) Denise Aslett et al.   BIODEGRADATION

Stable isotope probing identifies anthracene degraders under methanogenic conditions

(2011) Shuying Zhang et al.   BIODEGRADATION

Geochemical and microbiological processes contributing to the transformation of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) in contaminated aquifer material

(2011) Man Jae Kwon et al.   CHEMOSPHERE

Stable-isotope probing of the polycyclic aromatic hydrocarbon-degrading bacterial guild in a contaminated soil

(2011) Maiysha D. Jones et al.   ENVIRONMENTAL MICROBIOLOGY

Phase Preference by Active, Acetate-Utilizing Bacteria at the Rifle, CO Integrated Field Research Challenge Site

(2011) Lee J. Kerkhof et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Assimilation of benzene carbon through multiple trophic levels traced by different stable isotope probing methodologies

(2011) Felipe Bastida et al.   FEMS MICROBIOLOGY ECOLOGY

Electron acceptor-dependent identification of key anaerobic toluene degraders at a tar-oil-contaminated aquifer by Pyro-SIP

(2011) Giovanni Pilloni et al.   FEMS MICROBIOLOGY ECOLOGY

Acetate Availability and its Influence on Sustainable Bioremediation of Uranium-Contaminated Groundwater

(2011) Kenneth H. Williams et al.   GEOMICROBIOLOGY JOURNAL

Identification of anthracene degraders in leachate-contaminated aquifer using stable isotope probing

(2011) Shuying Zhang et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

The use of nucleic acid based stable isotope probing to identify the microorganisms responsible for anaerobic benzene and toluene biodegradation

(2011) Alison M. Cupples   JOURNAL OF MICROBIOLOGICAL METHODS

Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill

(2011) M. C. Redmond et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel aerobic benzene degrading microorganisms identified in three soils by stable isotope probing

(2010) Shuguang Xie et al.   BIODEGRADATION

Elucidating MTBE degradation in a mixed consortium using a multidisciplinary approach

(2010) Felipe Bastida et al.   FEMS MICROBIOLOGY ECOLOGY

DNA-SIP identifies sulfate-reducing Clostridia as important toluene degraders in tar-oil-contaminated aquifer sediment

(2010) Christian Winderl et al.   ISME Journal

When metagenomics meets stable-isotope probing: progress and perspectives

(2010) Yin Chen et al.   TRENDS IN MICROBIOLOGY

Stable Isotope Probing Identifies Novel m-Xylene Degraders in Soil Microcosms from Contaminated and Uncontaminated Sites

(2010) Shuguang Xie et al.   WATER AIR AND SOIL POLLUTION

Biphenyl-Metabolizing Bacteria in the Rhizosphere of Horseradish and Bulk Soil Contaminated by Polychlorinated Biphenyls as Revealed by Stable Isotope Probing

(2009) O. Uhlik et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DNA-Stable Isotope Probing Integrated with Metagenomics for Retrieval of Biphenyl Dioxygenase Genes from Polychlorinated Biphenyl-Contaminated River Sediment

(2009) W. J. Sul et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional characterization of an anaerobic benzene-degrading enrichment culture by DNA stable isotope probing

(2009) Steffi Herrmann et al.   ENVIRONMENTAL MICROBIOLOGY

Identification of Hexahydro-1,3,5-trinitro-1,3,5-triazine-Degrading Microorganisms via15N-Stable Isotope Probing

(2009) Hyungkeun Roh et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

A strictly anaerobic betaproteobacteriumGeorgfuchsia toluolicagen. nov., sp. nov. degrades aromatic compounds with Fe(III), Mn(IV) or nitrate as an electron acceptor

(2009) Sander A.B. Weelink et al.   FEMS MICROBIOLOGY ECOLOGY

Enrichment and characterization of  a sulfate-reducing toluene-degrading microbial consortium by combiningin situmicrocosms and stable isotope probing techniques

(2009) Petra Bombach et al.   FEMS MICROBIOLOGY ECOLOGY

Identification of putative benzene-degrading bacteria in methanogenic enrichment cultures

(2009) Nahoko Sakai et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Resolving Genetic Functions within Microbial Populations: In Situ Analyses Using rRNA and mRNA Stable Isotope Probing Coupled with Single-Cell Raman-Fluorescence In Situ Hybridization

(2008) W. E. Huang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of Critical Members in a Sulfidogenic Benzene-Degrading Consortium by DNA Stable Isotope Probing

(2008) A. R. Oka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Novel uncultured Chloroflexi dechlorinate perchloroethene to trans-dichloroethene in tidal flat sediments

(2008) Sandra Kittelmann et al.   ENVIRONMENTAL MICROBIOLOGY

Field-based and laboratory stable isotope probing surveys of the identities of both aerobic and anaerobic benzene-metabolizing microorganisms in freshwater sediment

(2008) J. S.-C. Liou et al.   ENVIRONMENTAL MICROBIOLOGY

Microorganisms involved in anaerobic phenol degradation in the treatment of synthetic coke-oven wastewater detected by RNA stable-isotope probing

(2008) Kazuo Sueoka et al.   FEMS MICROBIOLOGY LETTERS

Bio-Traps Coupled with Molecular Biological Methods and Stable Isotope Probing Demonstrate the In Situ Biodegradation Potential of MTBE and TBA in Gasoline-Contaminated Aquifers

(2008) Jennifer Busch-Harris et al.   GROUND WATER MONITORING AND REMEDIATION