Protein-based stable isotope probing (protein-SIP) in functional metaproteomics

Exploring the limits of robust detection of incorporation of 13C by mass spectrometry in protein-based stable isotope probing (protein-SIP)

(2011) Martin Taubert et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Programming of Host Metabolism by the Gut Microbiota

(2011) Fredrik Bäckhed   ANNALS OF NUTRITION AND METABOLISM

Identification of Biofilm Matrix-Associated Proteins from an Acid Mine Drainage Microbial Community

(2011) Yongqin Jiao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

An iterative workflow for mining the human intestinal metaproteome

(2011) Koos Rooijers et al.   BMC GENOMICS

Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community

(2011) Ryan S. Mueller et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial community and metabolomic comparison of irritable bowel syndrome faeces

(2011) K. Ponnusamy et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Metabolomics of Fecal Extracts Detects Altered Metabolic Activity of Gut Microbiota in Ulcerative Colitis and Irritable Bowel Syndrome

(2011) Gwénaëlle Le Gall et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative Tracking of Isotope Flows in Proteomes of Microbial Communities

(2011) Chongle Pan et al.   MOLECULAR & CELLULAR PROTEOMICS

Bacterial adaptation to life in association with plants - A proteomic perspective from culture to in situ conditions

(2011) Claudia Knief et al.   PROTEOMICS

Proteomics of a plant pathogen: Agrobacterium tumefaciens

(2011) Ran Rosen et al.   PROTEOMICS

Investigating pathogen biology at the level of the proteome

(2011) Phillip Cash   PROTEOMICS

Time resolved protein-based stable isotope probing (Protein-SIP) analysis allows quantification of induced proteins in substrate shift experiments

(2011) Martin Taubert et al.   PROTEOMICS

Sulfur-36S stable isotope labeling of amino acids for quantification (SULAQ)

(2011) Nico Jehmlich et al.   PROTEOMICS

Proteome analysis of host-pathogen interactions: Investigation of pathogen responses to the host cell environment

(2011) Frank Schmidt et al.   PROTEOMICS

Structure and function of the symbiosis partners of the lung lichen (Lobaria pulmonaria L. Hoffm.) analyzed by metaproteomics

(2011) Thomas Schneider et al.   PROTEOMICS

Evaluation of Accurate Mass and Relative Isotopic Abundance Measurements in the LTQ-Orbitrap Mass Spectrometer for Further Metabolomics Database Building

(2010) Ying Xu et al.   ANALYTICAL CHEMISTRY

Microbial Metagenomics: Beyond the Genome

(2010) Jack A. Gilbert et al.   Annual Review of Marine Science

Systems approaches to microbial communities and their functioning

(2010) Wilfred FM Röling et al.   CURRENT OPINION IN BIOTECHNOLOGY

Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome

(2010) Kristin E Burnum et al.   ISME Journal

Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction

(2010) Robert M Morris et al.   ISME Journal

Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community

(2010) N. Jehmlich et al.   JOURNAL OF APPLIED MICROBIOLOGY

Dietary Modulation of Gut Functional Ecology Studied by Fecal Metabonomics

(2010) Francois-Pierre J. Martin et al.   JOURNAL OF PROTEOME RESEARCH

Direct Cellular Lysis/Protein Extraction Protocol for Soil Metaproteomics

(2010) Karuna Chourey et al.   JOURNAL OF PROTEOME RESEARCH

Pathogen proteomes during infection: A basis for infection research and novel control strategies

(2010) Dirk Bumann   Journal of Proteomics

Decimal Place Slope, A Fast and Precise Method for Quantifying13C Incorporation Levels for Detecting the Metabolic Activity of Microbial Species

(2010) Nico Jehmlich et al.   MOLECULAR & CELLULAR PROTEOMICS

Time-resolved quantitative proteome profiling of host-pathogen interactions: The response of Staphylococcus aureus RN1HG to internalisation by human airway epithelial cells

(2010) Frank Schmidt et al.   PROTEOMICS

Isolation and Identification of Cellulose-Binding Proteins from Sheep Rumen Contents

(2009) A. Toyoda et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fluctuation of microbial activities after influent load variations in a full-scale SBR: recovery of the biomass after starvation

(2009) Angela Cabezas et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments

(2009) Dirk Benndorf et al.   BIODEGRADATION

Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics

(2009) Paola Picotti et al.   CELL

Microbial community proteomics: elucidating the catalysts and metabolic mechanisms that drive the Earth's biogeochemical cycles

(2009) Paul Wilmes et al.   CURRENT OPINION IN MICROBIOLOGY

A proteomic view of cell physiology and virulence of Staphylococcus aureus

(2009) Michael Hecker et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Microbial degradation of dimethylsulphide and related C1-sulphur compounds: organisms and pathways controlling fluxes of sulphur in the biosphere

(2009) H. Schafer et al.   JOURNAL OF EXPERIMENTAL BOTANY

Environmental Proteomics: a Paradigm Shift in Characterizing Microbial Activities at the Molecular Level

(2009) M. Keller et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

(2009) N. Delmotte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental proteomics: Analysis of structure and function of microbial communities

(2009) Thomas Schneider et al.   PROTEOMICS

Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (Protein-SIP) experiments

(2009) Nico Jehmlich et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures

(2008) Nico Jehmlich et al.   ISME Journal

Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal

(2008) Paul Wilmes et al.   ISME Journal

Shotgun metaproteomics of the human distal gut microbiota

(2008) Nathan C Verberkmoes et al.   ISME Journal

Metaproteomics Provides Functional Insight into Activated Sludge Wastewater Treatment

(2008) Paul Wilmes et al.   PLoS One

Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP)

(2008) Nico Jehmlich et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Proteomic Profiling of Plasmodium Sporozoite Maturation Identifies New Proteins Essential for Parasite Development and Infectivity

(2008) Edwin Lasonder et al.   PLoS Pathogens