Identification of Bacteria Utilizing Biphenyl, Benzoate, and Naphthalene in Long-Term Contaminated Soil

Bacterial Metabolism of Polychlorinated Biphenyls

(2012) Dietmar H. Pieper et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Identification of Nitrogen-Incorporating Bacteria in Petroleum-Contaminated Arctic Soils by Using [15N]DNA-Based Stable Isotope Probing and Pyrosequencing

(2011) Terrence H. Bell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Validation of Heavy-Water Stable Isotope Probing for the Characterization of Rapidly Responding Soil Bacteria

(2011) Zachary T. Aanderud et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Novel Biphenyl-Oxidizing Bacteria and Dioxygenase Genes from a Korean Tidal Mudflat

(2011) Tae Kwon Lee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Matrix-Assisted Laser Desorption Ionization (MALDI)-Time of Flight Mass Spectrometry- and MALDI Biotyper-Based Identification of Cultured Biphenyl-Metabolizing Bacteria from Contaminated Horseradish Rhizosphere Soil

(2011) Ondrej Uhlik et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequence analysis of bacterial communities in aerobic bioreactors treating polycyclic aromatic hydrocarbon-contaminated soil

(2011) David R. Singleton et al.   BIODEGRADATION

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Comparative metabolic capabilities for Micrococcus luteus NCTC 2665, the “Fleming” strain, and actinobacteria

(2011) J. Stefan Rokem et al.   BIOTECHNOLOGY AND BIOENGINEERING

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Stable-isotope probing of the polycyclic aromatic hydrocarbon-degrading bacterial guild in a contaminated soil

(2011) Maiysha D. Jones et al.   ENVIRONMENTAL MICROBIOLOGY

Electron acceptor-dependent identification of key anaerobic toluene degraders at a tar-oil-contaminated aquifer by Pyro-SIP

(2011) Giovanni Pilloni et al.   FEMS MICROBIOLOGY ECOLOGY

Endogeic earthworms shape bacterial functional communities and affect organic matter mineralization in a tropical soil

(2011) Laetitia Bernard et al.   ISME Journal

Autotrophic growth of nitrifying community in an agricultural soil

(2011) Weiwei Xia et al.   ISME Journal

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Using soil bacteria to facilitate phytoremediation

(2010) Bernard R. Glick   BIOTECHNOLOGY ADVANCES

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Complete Genome Sequence of the Haloaromatic Acid-Degrading Bacterium Achromobacter xylosoxidans A8

(2010) H. Strnad et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of the Photosynthetic Purple Nonsulfur Bacterium Rhodobacter capsulatus SB 1003

(2010) H. Strnad et al.   JOURNAL OF BACTERIOLOGY

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

An appraisal of methods for linking environmental processes to specific microbial taxa

(2010) Maria-Luisa Gutierrez-Zamora et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY

When metagenomics meets stable-isotope probing: progress and perspectives

(2010) Yin Chen et al.   TRENDS IN MICROBIOLOGY

Biphenyl-Metabolizing Bacteria in the Rhizosphere of Horseradish and Bulk Soil Contaminated by Polychlorinated Biphenyls as Revealed by Stable Isotope Probing

(2009) O. Uhlik et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DNA-Stable Isotope Probing Integrated with Metagenomics for Retrieval of Biphenyl Dioxygenase Genes from Polychlorinated Biphenyl-Contaminated River Sediment

(2009) W. J. Sul et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of a Newly Isolated Biphenyl-Degrading Bacterium, Dyella ginsengisoli LA-4

(2009) Ang Li et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Phyto/rhizoremediation studies using long-term PCB-contaminated soil

(2009) Martina Mackova et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Isolation and characterization of different plant associated bacteria and their potential to degrade polychlorinated biphenyls

(2009) Marieta Ionescu et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

Plant-Associated Bacterial Degradation of Toxic Organic Compounds in Soil

(2009) Martina McGuinness et al.   International Journal of Environmental Research and Public Health

Field-Based Stable Isotope Probing Reveals the Identities of Benzoic Acid-Metabolizing Microorganisms and Their In Situ Growth in Agricultural Soil

(2008) G. M. Pumphrey et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Resource availability influences the diversity of a functional group of heterotrophic soil bacteria

(2008) Silke Langenheder et al.   ENVIRONMENTAL MICROBIOLOGY

Assessing bacterial diversity in soil

(2008) Li Zhang et al.   JOURNAL OF SOILS AND SEDIMENTS

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

DNA-based stable isotope probing: a link between community structure and function

(2008) Ondrej Uhlík et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Organic carbon effects on aerobic polychlorinated biphenyl removal and bacterial community composition in soils and sediments

(2007) Wensui Luo et al.   CHEMOSPHERE