Genetic Associations in Four Decades of Multienvironment Trials Reveal Agronomic Trait Evolution in Common Bean

Parallel origins of photoperiod adaptation following dual domestications of common bean

(2019) James L Weller et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genotypes and Genomic Regions Associated With Rhizoctonia solani Resistance in Common Bean

(2019) Atena Oladzad et al.   Frontiers in Plant Science

Genome-Wide Association Study Reveals Candidate Genes for Flowering Time Variation in Common Bean (Phaseolus vulgaris L.)

(2019) Lorenzo Raggi et al.   Frontiers in Plant Science

Quantile regression for genome-wide association study of flowering time-related traits in common bean

(2018) Moysés Nascimento et al.   PLoS One

Genetic Analysis of Flooding Tolerance in an Andean Diversity Panel of Dry Bean (Phaseolus vulgaris L.)

(2018) Ali Soltani et al.   Frontiers in Plant Science

Genomic Analysis and Prediction within a US Public Collaborative Winter Wheat Regional Testing Nursery

(2018) Trevor W. Rife et al.   Plant Genome

Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions

(2018) Sarah M. Urbut et al.   NATURE GENETICS

Genome-wide Association Studies in Maize: Praise and Stargaze

(2017) Yingjie Xiao et al.   Molecular Plant

The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog

(2017) Matteo Togninalli et al.   NUCLEIC ACIDS RESEARCH

Genetic analysis of multi-environmental spring wheat trials identifies genomic regions for locus-specific trade-offs for grain weight and grain number

(2017) Sivakumar Sukumaran et al.   THEORETICAL AND APPLIED GENETICS

Height associated variants demonstrate assortative mating in human populations

(2017) Xiaoyin Li et al.   Scientific Reports

Genome-Wide Linkage and Association Mapping of Halo Blight Resistance in Common Bean to Race 6 of the Globally Important Bacterial Pathogen

(2017) Andrew J. Tock et al.   Frontiers in Plant Science

False discovery rates: a new deal

(2016) Matthew Stephens   BIOSTATISTICS

Selective Phenotyping Traits Related to Multiple Stress and Drought Response in Dry Bean

(2016) Jennifer J. Trapp et al.   CROP SCIENCE

Targeted Analysis of Dry Bean Growth Habit: Interrelationship among Architectural, Phenological, and Yield Components

(2016) Ali Soltani et al.   CROP SCIENCE

Optimization of genotyping by sequencing (GBS) data in common bean (Phaseolus vulgaris L.)

(2016) Stephan Schröder et al.   MOLECULAR BREEDING

Integrative genomic analysis implicates limited peripheral adipose storage capacity in the pathogenesis of human insulin resistance

(2016) Luca A Lotta et al.   NATURE GENETICS

The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog)

(2016) Jacqueline MacArthur et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation

(2016) Miguel de Lucas et al.   PLANT CELL

Open access resources for genome-wide association mapping in rice

(2016) Susan R. McCouch et al.   Nature Communications

Fine Mapping of Ur-3 , a Historically Important Rust Resistance Locus in Common Bean

(2016) Oscar P. Hurtado-Gonzales et al.   G3-Genes Genomes Genetics

Genome-Wide Association Study Identifies Candidate Loci Underlying Agronomic Traits in a Middle American Diversity Panel of Common Bean

(2016) Samira Mafi Moghaddam et al.   Plant Genome

Quantitative Trait Loci for Yield under Multiple Stress and Drought Conditions in a Dry Bean Population

(2015) Jennifer J. Trapp et al.   CROP SCIENCE

A Diversity Panel for Andean Bean Improvement

(2015) Karen A. Cichy et al.   CROP SCIENCE

Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family

(2015) Sudhansu Dash et al.   NUCLEIC ACIDS RESEARCH

The VQ Motif-Containing Protein Family of Plant-Specific Transcriptional Regulators

(2015) Yanjun Jing et al.   PLANT PHYSIOLOGY

Genome-wide association analysis of symbiotic nitrogen fixation in common bean

(2015) Kelvin Kamfwa et al.   THEORETICAL AND APPLIED GENETICS

Genome-Wide Association Study of Agronomic Traits in Common Bean

(2015) Kelvin Kamfwa et al.   Plant Genome

Genome-environment associations in sorghum landraces predict adaptive traits

(2015) J. R. Lasky et al.   Science Advances

An RNA-Seq based gene expression atlas of the common bean

(2014) Jamie A O’Rourke et al.   BMC GENOMICS

UpSet: Visualization of Intersecting Sets

(2014) Alexander Lex et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

A reference genome for common bean and genome-wide analysis of dual domestications

(2014) Jeremy Schmutz et al.   NATURE GENETICS

Genomic analyses provide insights into the history of tomato breeding

(2014) Tao Lin et al.   NATURE GENETICS

An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments

(2014) Jorge Duitama et al.   NUCLEIC ACIDS RESEARCH

Two inositol hexakisphosphate kinases drive inositol pyrophosphate synthesis in plants

(2014) Mintu Desai et al.   PLANT JOURNAL

Timing Mechanism Dependent on Cell Division Is Invoked by Polycomb Eviction in Plant Stem Cells

(2014) B. Sun et al.   SCIENCE

Plant terpenes: defense responses, phylogenetic analysis, regulation and clinical applications

(2014) Bharat Singh et al.   3 Biotech

In silico integration of quantitative trait loci for seed yield and yield-related traits in Brassica napus

(2013) Qing-Hong Zhou et al.   MOLECULAR BREEDING

Multiple origins of the determinate growth habit in domesticated common bean (Phaseolus vulgaris)

(2012) Myounghai Kwak et al.   ANNALS OF BOTANY

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

Flowering time and transcriptome variation inCapsella bursa-pastoris(Brassicaceae)

(2012) Hui-Run Huang et al.   NEW PHYTOLOGIST

The common bean growth habit gene PvTFL1y is a functional homolog of Arabidopsis TFL1

(2012) S. L. Repinski et al.   THEORETICAL AND APPLIED GENETICS

Informed Conditioning on Clinical Covariates Increases Power in Case-Control Association Studies

(2012) Noah Zaitlen et al.   PLoS Genetics

The Covariate's Dilemma

(2012) Joel Mefford et al.   PLoS Genetics

Abundant Pleiotropy in Human Complex Diseases and Traits

(2011) Shanya Sivakumaran et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Investigation of the domestication of common bean (Phaseolus vulgaris) using multilocus sequence data

(2011) Sujan Mamidi et al.   FUNCTIONAL PLANT BIOLOGY

Adaptation to Climate Across the Arabidopsis thaliana Genome

(2011) A. M. Hancock et al.   SCIENCE

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Fine Mapping in 94 Inbred Mouse Strains Using a High-Density Haplotype Resource

(2010) A. Kirby et al.   GENETICS

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

Common vs. rare allele hypotheses for complex diseases

(2009) Nicholas J Schork et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT