Assessment of bacterial community composition within and among Acropora loripes colonies in the wild and in captivity

Disentangling the effect of host-genotype and environment on the microbiome of the coral Acropora tenuis

(2019) Bettina Glasl et al.   PeerJ

Parental and early life stage environments drive establishment of bacterial and dinoflagellate communities in a common coral

(2019) Hannah E. Epstein et al.   ISME Journal

The roles of age, parentage and environment on bacterial and algal endosymbiont communities in Acropora corals

(2019) Wing Yan Chan et al.   MOLECULAR ECOLOGY

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Early Life Stages of a Common Broadcast Spawning Coral Associate with Specific Bacterial Communities Despite Lack of Internalized Bacteria

(2019) Katarina Damjanovic et al.   MICROBIAL ECOLOGY

Bacterial and algal symbiont dynamics in early recruits exposed to two adult coral species

(2019) Katarina Damjanovic et al.   CORAL REEFS

Mixed‐mode bacterial transmission in the common brooding coral Pocillopora acuta

(2019) Katarina Damjanovic et al.   ENVIRONMENTAL MICROBIOLOGY

Rethinking the Coral Microbiome: Simplicity Exists within a Diverse Microbial Biosphere

(2018) Alejandra Hernandez-Agreda et al.   mBio

Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

(2018) F. Joseph Pollock et al.   Nature Communications

Highly structured prokaryote communities exist within the skeleton of coral colonies

(2017) Vanessa R Marcelino et al.   ISME Journal

Capturing the genetic makeup of the active microbiome in situ

(2017) Esther Singer et al.   ISME Journal

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Defining the Core Microbiome in Corals’ Microbial Soup

(2017) Alejandra Hernandez-Agreda et al.   TRENDS IN MICROBIOLOGY

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

Endozoicomonas genomes reveal functional adaptation and plasticity in bacterial strains symbiotically associated with diverse marine hosts

(2017) Matthew J. Neave et al.   Scientific Reports

Insights into the Coral Microbiome: Underpinning the Health and Resilience of Reef Ecosystems

(2016) David G. Bourne et al.   Annual Review of Microbiology

Diversity and function of prevalent symbiotic marine bacteria in the genus Endozoicomonas

(2016) Matthew J. Neave et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Simkania negevensis, an insight into the biology and clinical importance of a novel member of the Chlamydiales order

(2016) Manon Vouga et al.   CRITICAL REVIEWS IN MICROBIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Distinguishing between Microbial Habitats Unravels Ecological Complexity in Coral Microbiomes

(2016) Amy Apprill et al.   mSystems

Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix

(2015) Olga Pantos et al.   ISME Journal

Stable and sporadic symbiotic communities of coral and algal holobionts

(2015) Eric R Hester et al.   ISME Journal

Microbiota shifts in the surface mucopolysaccharide layer of corals transferred from natural to aquaria settings

(2015) Zoe A. Pratte et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Coral-the world's most diverse symbiotic ecosystem

(2015) Linda L. Blackall et al.   MOLECULAR ECOLOGY

Spatial Homogeneity of Bacterial Communities Associated with the Surface Mucus Layer of the Reef-Building Coral Acropora palmata

(2015) Dustin W. Kemp et al.   PLoS One

Age-Related Shifts in Bacterial Diversity in a Reef Coral

(2015) Alex D. Williams et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Spatial and Species Variations in Bacterial Communities Associated with Corals from the Red Sea as Revealed by Pyrosequencing

(2012) On On Lee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Biological and chemical characteristics of the coral gastric cavity

(2011) S. Agostini et al.   CORAL REEFS

Spatial heterogeneity of bacterial communities in the mucus of Montastraea annularis

(2011) CA Daniels et al.   MARINE ECOLOGY PROGRESS SERIES

Unity in Variety--The Pan-Genome of the Chlamydiae

(2011) A. Collingro et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bacterial assemblages differ between compartments within the coral holobiont

(2010) M. J. Sweet et al.   CORAL REEFS

Mucus composition and bacterial communities associated with the tissue and skeleton of three scleractinian corals maintained under culture conditions

(2010) Pascale Tremblay et al.   JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM

Coral-Associated Bacteria and Their Role in the Biogeochemical Cycling of Sulfur

(2009) J.-B. Raina et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Metagenomic analysis of stressed coral holobionts

(2009) Rebecca Vega Thurber et al.   ENVIRONMENTAL MICROBIOLOGY

Diversities of coral-associated bacteria differ with location, but not species, for three acroporid corals on the Great Barrier Reef

(2009) Raechel A. Littman et al.   FEMS MICROBIOLOGY ECOLOGY

Community composition of bacteria associated with cold-water coral Madrepora oculata: within and between colony variability

(2009) L Hansson et al.   MARINE ECOLOGY PROGRESS SERIES

Simultaneous Inference in General Parametric Models

(2008) Torsten Hothorn et al.   BIOMETRICAL JOURNAL

Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing

(2008) Anders F. Andersson et al.   PLoS One