Mixed‐mode bacterial transmission in the common brooding coral Pocillopora acuta

Disentangling the effect of host-genotype and environment on the microbiome of the coral Acropora tenuis

(2019) Bettina Glasl et al.   PeerJ

SymPortal: a novel analytical framework and platform for coral algal symbiont next-generation sequencing ITS2 profiling

(2019) B. C. C. Hume et al.   Molecular Ecology Resources

Parental and early life stage environments drive establishment of bacterial and dinoflagellate communities in a common coral

(2019) Hannah E. Epstein et al.   ISME Journal

Establishment of Coral-Bacteria Symbioses Reveal Changes in the Core Bacterial Community With Host Ontogeny

(2019) Rachele Bernasconi et al.   Frontiers in Microbiology

Experimental Inoculation of Coral Recruits With Marine Bacteria Indicates Scope for Microbiome Manipulation in Acropora tenuis and Platygyra daedalea

(2019) Katarina Damjanovic et al.   Frontiers in Microbiology

Early Life Stages of a Common Broadcast Spawning Coral Associate with Specific Bacterial Communities Despite Lack of Internalized Bacteria

(2019) Katarina Damjanovic et al.   MICROBIAL ECOLOGY

Unexpected mixed-mode transmission and moderate genetic regulation of Symbiodinium communities in a brooding coral

(2018) Kate M. Quigley et al.   HEREDITY

Defining the Impact of Host Genotypes on Microbiota Composition Requires Meticulous Control of Experimental Variables

(2018) Andy Wullaert et al.   IMMUNITY

Scaling up: A guide to high-throughput genomic approaches for biodiversity analysis

(2018) Teresita M. Porter et al.   MOLECULAR ECOLOGY

How the microbiome challenges our concept of self

(2018) Tobias Rees et al.   PLOS BIOLOGY

Thermal regime and host clade, rather than geography, drive Symbiodinium and bacterial assemblages in the scleractinian coral Pocillopora damicornis sensu lato

(2018) Kelly Brener-Raffalli et al.   Microbiome

Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts

(2018) Todd C. LaJeunesse et al.   CURRENT BIOLOGY

Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

(2018) F. Joseph Pollock et al.   Nature Communications

Microbiome dynamics in early life stages of the scleractinian coral Acropora gemmifera in response to elevated p CO2

(2017) Guowei Zhou et al.   ENVIRONMENTAL MICROBIOLOGY

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Defining the Core Microbiome in Corals’ Microbial Soup

(2017) Alejandra Hernandez-Agreda et al.   TRENDS IN MICROBIOLOGY

Broadcast Spawning Coral Mussismilia hispida Can Vertically Transfer its Associated Bacterial Core

(2017) Deborah C. A. Leite et al.   Frontiers in Microbiology

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

Genotype and local environment dynamically influence growth, disturbance response and survivorship in the threatened coral, Acropora cervicornis

(2017) Crawford Drury et al.   PLoS One

Endozoicomonas genomes reveal functional adaptation and plasticity in bacterial strains symbiotically associated with diverse marine hosts

(2017) Matthew J. Neave et al.   Scientific Reports

Insights into the Coral Microbiome: Underpinning the Health and Resilience of Reef Ecosystems

(2016) David G. Bourne et al.   Annual Review of Microbiology

Diversity and function of prevalent symbiotic marine bacteria in the genus Endozoicomonas

(2016) Matthew J. Neave et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales

(2016) Matthew J Neave et al.   ISME Journal

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

The Microbial Signature Provides Insight into the Mechanistic Basis of Coral Success across Reef Habitats

(2016) Alejandra Hernandez-Agreda et al.   mBio

Microbial Dysbiosis: Rethinking Disease in Marine Ecosystems

(2016) Suhelen Egan et al.   Frontiers in Microbiology

Genomic Insight into the Host–Endosymbiont Relationship of Endozoicomonas montiporae CL-33T with its Coral Host

(2016) Jiun-Yan Ding et al.   Frontiers in Microbiology

Isolation of an antimicrobial compound produced by bacteria associated with reef-building corals

(2016) Jean-Baptiste Raina et al.   PeerJ

In situvisualization of bacterial populations in coral tissues: pitfalls and solutions

(2016) Naohisa Wada et al.   PeerJ

Intra-genomic variation in symbiotic dinoflagellates: recent divergence or recombination between lineages?

(2015) Shaun P Wilkinson et al.   BMC EVOLUTIONARY BIOLOGY

Imaging the uptake of nitrogen-fixing bacteria into larvae of the coral Acropora millepora

(2015) Kimberley A Lema et al.   ISME Journal

The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts

(2015) Tracy D Ainsworth et al.   ISME Journal

Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix

(2015) Olga Pantos et al.   ISME Journal

Stable and sporadic symbiotic communities of coral and algal holobionts

(2015) Eric R Hester et al.   ISME Journal

Effects of sediments on the reproductive cycle of corals

(2015) R. Jones et al.   MARINE POLLUTION BULLETIN

Coral-the world's most diverse symbiotic ecosystem

(2015) Linda L. Blackall et al.   MOLECULAR ECOLOGY

The functional gene composition and metabolic potential of coral-associated microbial communities

(2015) Yanying Zhang et al.   Scientific Reports

Microbial Communities on Seafloor Basalts at Dorado Outcrop Reflect Level of Alteration and Highlight Global Lithic Clades

(2015) Michael D. Lee et al.   Frontiers in Microbiology

Age-Related Shifts in Bacterial Diversity in a Reef Coral

(2015) Alex D. Williams et al.   PLoS One

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Microbial aggregates within tissues infect a diversity of corals throughout the Indo-Pacific

(2014) TM Work et al.   MARINE ECOLOGY PROGRESS SERIES

Onset and establishment of diazotrophs and other bacterial associates in the early life history stages of the coralAcropora millepora

(2014) Kimberley A. Lema et al.   MOLECULAR ECOLOGY

With eyes wide open: a revision of species within and closely related to thePocillopora damicornisspecies complex (Scleractinia; Pocilloporidae) using morphology and genetics

(2014) Sebastian Schmidt-Roach et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Bacterial dynamics within the mucus, tissue and skeleton of the coral Porites lutea during different seasons

(2014) Jie Li et al.   Scientific Reports

Cnidarian-Microbe Interactions and the Origin of Innate Immunity in Metazoans

(2013) Thomas C.G. Bosch   Annual Review of Microbiology

Multiple Symbiont Acquisition Strategies as an Adaptive Mechanism in the Coral Stylophora pistillata

(2013) Kristen A. Byler et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nutrient cycling in early coral life stages:Pocillopora damicornislarvae provide their algal symbiont (Symbiodinium) with nitrogen acquired from bacterial associates

(2013) Janja Ceh et al.   Ecology and Evolution

Specificity of Associations between Bacteria and the Coral Pocillopora meandrina during Early Development

(2012) Amy Apprill et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

(2012) Daniel McDonald et al.   GigaScience

Diversity and dynamics of bacterial communities in early life stages of the Caribbean coral Porites astreoides

(2011) Koty H Sharp et al.   ISME Journal

Spatial heterogeneity of bacterial communities in the mucus of Montastraea annularis

(2011) CA Daniels et al.   MARINE ECOLOGY PROGRESS SERIES

Bacterial assemblages differ between compartments within the coral holobiont

(2010) M. J. Sweet et al.   CORAL REEFS

Mucus composition and bacterial communities associated with the tissue and skeleton of three scleractinian corals maintained under culture conditions

(2010) Pascale Tremblay et al.   JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM

Responses of coral-associated bacterial communities to heat stress differ withSymbiodiniumtype on the same coral host

(2010) RAECHEL A. LITTMAN et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

A complex journey: transmission of microbial symbionts

(2010) Monika Bright et al.   NATURE REVIEWS MICROBIOLOGY

Threatened Corals Provide Underexplored Microbial Habitats

(2010) Shinichi Sunagawa et al.   PLoS One

Bacterial Acquisition in Juveniles of Several Broadcast Spawning Coral Species

(2010) Koty H. Sharp et al.   PLoS One

Systematic and Biogeographical Patterns in the Reproductive Biology of Scleractinian Corals

(2009) Andrew H. Baird et al.   Annual Review of Ecology Evolution and Systematics

Coral-Associated Bacteria and Their Role in the Biogeochemical Cycling of Sulfur

(2009) J.-B. Raina et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Coral mucus-associated bacteria: a possible first line of defense

(2009) Maya Shnit-Orland et al.   FEMS MICROBIOLOGY ECOLOGY

Antimicrobial properties of resident coral mucus bacteria ofOculina patagonica

(2009) Jozef Nissimov et al.   FEMS MICROBIOLOGY LETTERS

The onset of microbial associations in the coral Pocillopora meandrina

(2009) Amy Apprill et al.   ISME Journal

Bacterial communities of juvenile corals infected with different Symbiodinium (dinoflagellate) clades

(2009) RA Littman et al.   MARINE ECOLOGY PROGRESS SERIES

Specificity in communities of Symbiodinium in corals from Johnston Atoll

(2009) M Stat et al.   MARINE ECOLOGY PROGRESS SERIES

Cohesive molecular genetic data delineate species diversity in the dinoflagellate genusSymbiodinium

(2009) E. M. SAMPAYO et al.   MOLECULAR ECOLOGY

Bacterial communities closely associated with coral tissues vary under experimental and natural reef conditions and thermal stress

(2008) TD Ainsworth et al.   Aquatic Biology

Simultaneous Inference in General Parametric Models

(2008) Torsten Hothorn et al.   BIOMETRICAL JOURNAL

Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing

(2008) Anders F. Andersson et al.   PLoS One