Genome-wide analysis of CCHC-type zinc finger (ZCCHC) proteins in yeast, Arabidopsis, and humans

ZCCHC10 suppresses lung cancer progression and cisplatin resistance by attenuating MDM2-mediated p53 ubiquitination and degradation

(2019) Yichong Ning et al.   Cell Death & Disease

Identification of LARK as a novel and conserved G-quadruplex binding protein in invertebrates and vertebrates

(2019) Kangkang Niu et al.   NUCLEIC ACIDS RESEARCH

CNBP controls transcription by unfolding DNA G-quadruplex structures

(2019) Aldana P David et al.   NUCLEIC ACIDS RESEARCH

Ectopically expressed pNO40 suppresses ribosomal RNA synthesis by inhibiting UBF-dependent transcription activation

(2019) Yen-Ming Lin et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

PNMA family: Protein interaction network and cell signalling pathways implicated in cancer and apoptosis

(2018) Siew Wai Pang et al.   CELLULAR SIGNALLING

TANDEM ZINC-FINGER/PLUS3 Is a Key Component of Phytochrome A Signaling

(2018) Shaoman Zhang et al.   PLANT CELL

PEG10 as an oncogene: expression regulatory mechanisms and role in tumor progression

(2018) Tian Xie et al.   Cancer Cell International

Transposable Elements Contribute to the Adaptation of Arabidopsis thaliana

(2018) Zi-Wen Li et al.   Genome Biology and Evolution

The Zinc-Finger Protein ZCCHC3 Binds RNA and Facilitates Viral RNA Sensing and Activation of the RIG-I-like Receptors

(2018) Huan Lian et al.   IMMUNITY

ZCCHC3 is a co-sensor of cGAS for dsDNA recognition in innate immune response

(2018) Huan Lian et al.   Nature Communications

N6-Methyladenosine methyltransferase ZCCHC4 mediates ribosomal RNA methylation

(2018) Honghui Ma et al.   Nature Chemical Biology

Targeting RNA for processing or destruction by the eukaryotic RNA exosome and its cofactors

(2017) John C. Zinder et al.   GENES & DEVELOPMENT

The Spliceosome: A Protein-Directed Metalloribozyme

(2017) Yigong Shi   JOURNAL OF MOLECULAR BIOLOGY

Mechanistic insights into precursor messenger RNA splicing by the spliceosome

(2017) Yigong Shi   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Intrinsically disordered RGG/RG domains mediate degenerate specificity in RNA binding

(2017) Bagdeser A. Ozdilek et al.   NUCLEIC ACIDS RESEARCH

Small RNA-mediated repair of UV-induced DNA lesions by the DNA DAMAGE-BINDING PROTEIN 2 and ARGONAUTE 1

(2017) Catherine Schalk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cleavage and polyadenylation: Ending the message expands gene regulation

(2017) Jonathan Neve et al.   RNA Biology

The Human CCHC-type Zinc Finger Nucleic Acid-Binding Protein Binds G-Rich Elements in Target mRNA Coding Sequences and Promotes Translation

(2017) Daniel Benhalevy et al.   Cell Reports

The new (dis)order in RNA regulation

(2016) Aino I. Järvelin et al.   Cell Communication and Signaling

Interaction properties of human TRAMP-like proteins and their role in pre-rRNA 5′ETS turnover

(2016) Haruka Sudo et al.   FEBS LETTERS

RMI1 and TOP3α limit meiotic CO formation through their C-terminal domains

(2016) Mathilde Séguéla-Arnaud et al.   NUCLEIC ACIDS RESEARCH

InterPro in 2017—beyond protein family and domain annotations

(2016) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Structure of the RBM7–ZCCHC8 core of the NEXT complex reveals connections to splicing factors

(2016) Sebastian Falk et al.   Nature Communications

Structural and biochemical characterization of an RNA/DNA binding motif in the N-terminal domain of RecQ4 helicases

(2016) Francesca Marino et al.   Scientific Reports

XRN2 Links Transcription Termination to DNA Damage and Replication Stress

(2016) Julio C. Morales et al.   PLoS Genetics

PARAQUAT TOLERANCE3 Is an E3 Ligase That Switches off Activated Oxidative Response by Targeting Histone-Modifying PROTEIN METHYLTRANSFERASE4b

(2016) Chao Luo et al.   PLoS Genetics

The emerging roles of the DDX41 protein in immunity and diseases

(2016) Yan Jiang et al.   Protein & Cell

Molecular Evolution and Functional Diversification of Replication Protein A1 in Plants

(2016) Behailu B. Aklilu et al.   Frontiers in Plant Science

LIN28: roles and regulation in development and beyond

(2015) J. Tsialikas et al.   DEVELOPMENT

Structure and Assembly Pathway of the Ribosome Quality Control Complex

(2015) Sichen Shao et al.   MOLECULAR CELL

Defining the RNA-binding glycine-rich (RBG) gene superfamily: new insights into nomenclature, phylogeny, and evolutionary trends obtained by genome-wide comparative analysis of Arabidopsis, Chinese cabbage, rice and maize genomes

(2015) Panneerselvam Krishnamurthy et al.   MOLECULAR GENETICS AND GENOMICS

ArabidopsisMAS2, an Essential Gene That Encodes a Homolog of Animal NF-κ B Activating Protein, Is Involved in 45S Ribosomal DNA Silencing

(2015) Ana Belén Sánchez-García et al.   PLANT CELL

RNA-binding proteins At RZ-1B and At RZ-1C play a critical role in regulation of pre-mRNA splicing and gene expression during Arabidopsis development

(2015) Zhe Wu et al.   PLANT CELL

MYBD employed by HY5 increases anthocyanin accumulation via repression ofMYBL2in Arabidopsis

(2015) Nguyen Hoai Nguyen et al.   PLANT JOURNAL

The C-terminal helix in the YjeQ zinc-finger domain catalyzes the release of RbfA during 30S ribosome subunit assembly

(2015) Ajitha Jeganathan et al.   RNA

Synergistic and Independent Actions of Multiple Terminal Nucleotidyl Transferases in the 3’ Tailing of Small RNAs in Arabidopsis

(2015) Xiaoyan Wang et al.   PLoS Genetics

Rrp6: Integrated roles in nuclear RNA metabolism and transcription termination

(2015) Melanie J. Fox et al.   Wiley Interdisciplinary Reviews-RNA

Regulation of gene expression through inefficient splicing of U12-type introns

(2015) Elina H Niemelä et al.   RNA Biology

CNBP regulates wing development inDrosophila melanogasterby promoting IRES-dependent translation of dMyc

(2014) Laura Antonucci et al.   CELL CYCLE

RBBP6 isoforms regulate the human polyadenylation machinery and modulate expression of mRNAs with AU-rich 3′ UTRs

(2014) Dafne Campigli Di Giammartino et al.   GENES & DEVELOPMENT

Efficient mRNA Polyadenylation Requires a Ubiquitin-Like Domain, a Zinc Knuckle, and a RING Finger Domain, All Contained in the Mpe1 Protein

(2014) S. D. Lee et al.   MOLECULAR AND CELLULAR BIOLOGY

Regulation of microRNA biogenesis

(2014) Minju Ha et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A homolog of splicing factor SF1 is essential for development and is involved in the alternative splicing of pre-mRNA inArabidopsis thaliana

(2014) Yun Hee Jang et al.   PLANT JOURNAL

A chloroplast-localized DEAD-box RNA helicaseAtRH3 is essential for intron splicing and plays an important role in the growth and stress response in Arabidopsis thaliana

(2014) Lili Gu et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Transcriptional control of ROS homeostasis by KUODA1 regulates cell expansion during leaf development

(2014) Dandan Lu et al.   Nature Communications

The RNA Helicases AtMTR4 and HEN2 Target Specific Subsets of Nuclear Transcripts for Degradation by the Nuclear Exosome in Arabidopsis thaliana

(2014) Heike Lange et al.   PLoS Genetics

The RNAissance family: SR proteins as multifaceted regulators of gene expression

(2014) Jonathan M. Howard et al.   Wiley Interdisciplinary Reviews-RNA

Cytoplasmic 5′-3′ exonuclease Xrn1p is also a genome-wide transcription factor in yeast

(2014) Daniel A. Medina et al.   Frontiers in Genetics

Interactome analysis reveals versatile functions of Arabidopsis COLD SHOCK DOMAIN PROTEIN 3 in RNA processing within the nucleus and cytoplasm

(2013) Myung-Hee Kim et al.   CELL STRESS & CHAPERONES

A novel Arabidopsis MYB-like transcription factor, MYBH, regulates hypocotyl elongation by enhancing auxin accumulation

(2013) Yerim Kwon et al.   JOURNAL OF EXPERIMENTAL BOTANY

Discovery and Expression Analysis of Alternative Splicing Events Conserved among Plant SR Proteins

(2013) Hypaitia B. Rauch et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Complexity of Human Ribosome Biogenesis Revealed by Systematic Nucleolar Screening of Pre-rRNA Processing Factors

(2013) Lionel Tafforeau et al.   MOLECULAR CELL

Arabidopsis COLD SHOCK DOMAIN PROTEIN 2 is a negative regulator of cold acclimation

(2013) Kentaro Sasaki et al.   NEW PHYTOLOGIST

CYCLIN-DEPENDENT KINASE G1 Is Associated with the Spliceosome to Regulate CALLOSE SYNTHASE5 Splicing and Pollen Wall Formation in Arabidopsis

(2013) X.-Y. Huang et al.   PLANT CELL

Cold shock protein 1 chaperones mRNAs during translation inArabidopsis thaliana

(2013) Piyada Juntawong et al.   PLANT JOURNAL

COLD SHOCK DOMAIN PROTEIN 3 is involved in salt and drought stress tolerance in Arabidopsis

(2013) Myung-Hee Kim et al.   FEBS Open Bio

LIN28A Is a Suppressor of ER-Associated Translation in Embryonic Stem Cells

(2012) Jun Cho et al.   CELL

The RNA polymerase II CTD coordinates transcription and RNA processing

(2012) J.-P. Hsin et al.   GENES & DEVELOPMENT

RNA Degradation in Saccharomyces cerevisae

(2012) Roy Parker   GENETICS

Chloroplast RH3 DEAD Box RNA Helicases in Maize and Arabidopsis Function in Splicing of Specific Group II Introns and Affect Chloroplast Ribosome Biogenesis

(2012) Y. Asakura et al.   PLANT PHYSIOLOGY

Yeast Gis2 and Its Human Ortholog CNBP Are Novel Components of Stress-Induced RNP Granules

(2012) Marta Rojas et al.   PLoS One

The spliceosome: a flexible, reversible macromolecular machine

(2012) Aaron A. Hoskins et al.   TRENDS IN BIOCHEMICAL SCIENCES

Saccharomyces cerevisiae Gis2 interacts with the translation machinery and is orthogonal to myotonic dystrophy type 2 protein ZNF9

(2011) Morgan A. Sammons et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Lin28A and Lin28B Inhibit let-7 MicroRNA Biogenesis by Distinct Mechanisms

(2011) Elena Piskounova et al.   CELL

PutativeArabidopsishomologues of metazoan coiled-coil cytoskeletal proteins

(2011) John Gardiner et al.   CELL BIOLOGY INTERNATIONAL

Air1 Zinc Knuckles 4 and 5 and a Conserved IWRXY Motif Are Critical for the Function and Integrity of the Trf4/5-Air1/2-Mtr4 Polyadenylation (TRAMP) RNA Quality Control Complex

(2011) Milo B. Fasken et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Interaction Profiling Identifies the Human Nuclear Exosome Targeting Complex

(2011) Michal Lubas et al.   MOLECULAR CELL

MTR4, a putative RNA helicase and exosome co-factor, is required for proper rRNA biogenesis and development inArabidopsis thaliana

(2011) Heike Lange et al.   PLANT JOURNAL

Evolution of SR protein and hnRNP splicing regulatory factors

(2011) Anke Busch et al.   Wiley Interdisciplinary Reviews-RNA

Eukaryotic cold shock domain proteins: highly versatile regulators of gene expression

(2010) Marija Mihailovich et al.   BIOESSAYS

1H, 13C, and 15N chemical shift assignments of ZCCHC9

(2010) Maria Sanudo et al.   Biomolecular NMR Assignments

Evolutionary dynamics of U12-type spliceosomal introns

(2010) Chiao-Feng Lin et al.   BMC EVOLUTIONARY BIOLOGY

Low-complexity regions within protein sequences have position-dependent roles

(2010) Alain Coletta et al.   BMC Systems Biology

A rational nomenclature for serine/arginine-rich protein splicing factors (SR proteins)

(2010) J. L. Manley et al.   GENES & DEVELOPMENT

Regulation of Microtubule Dynamics by Bim1 and Bik1, the Budding Yeast Members of the EB1 and CLIP-170 Families of Plus-End Tracking Proteins

(2010) Kristina A. Blake-Hodek et al.   MOLECULAR BIOLOGY OF THE CELL

Arabidopsis thaliana XRN2 is required for primary cleavage in the pre-ribosomal RNA

(2010) Monika Zakrzewska-Placzek et al.   NUCLEIC ACIDS RESEARCH

TheArabidopsisU12-Type Spliceosomal Protein U11/U12-31K Is Involved in U12 Intron Splicing via RNA Chaperone Activity and Affects Plant Development

(2010) Won Yong Kim et al.   PLANT CELL

Form, Function, and Regulation of ARGONAUTE Proteins

(2010) Allison Mallory et al.   PLANT CELL

Dynamic Nucleocytoplasmic Shuttling of an Arabidopsis SR Splicing Factor: Role of the RNA-Binding Domains

(2010) G. Rausin et al.   PLANT PHYSIOLOGY

TUT4 in Concert with Lin28 Suppresses MicroRNA Biogenesis through Pre-MicroRNA Uridylation

(2009) Inha Heo et al.   CELL

Reduction of the Rate of Protein Translation in Patients with Myotonic Dystrophy 2

(2009) C. Huichalaf et al.   JOURNAL OF NEUROSCIENCE

Eukaryotic Stress Granules: The Ins and Outs of Translation

(2009) J. Ross Buchan et al.   MOLECULAR CELL

The SR protein family of splicing factors: master regulators of gene expression

(2008) Jennifer C. Long et al.   BIOCHEMICAL JOURNAL

The nuclear RNA surveillance machinery: The link between ncRNAs and genome structure in budding yeast?

(2008) Jonathan Houseley et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Co-localisation studies of Arabidopsis SR splicing factors reveal different types of speckles in plant cell nuclei

(2008) Z LORKOVIC et al.   EXPERIMENTAL CELL RESEARCH

Efficient termination of transcription by RNA polymerase I requires the 5' exonuclease Rat1 in yeast

(2008) A. El Hage et al.   GENES & DEVELOPMENT

RBM4: A multifunctional RNA-binding protein

(2008) M. Andrea Markus et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

A nuclear localized protein ZCCHC9 is expressed in cerebral cortex and suppresses the MAPK signal pathway

(2008) Aidong Zhou et al.   Journal of Genetics and Genomics

Degradation of a Polyadenylated rRNA Maturation By-Product Involves One of the Three RRP6-Like Proteins in Arabidopsis thaliana

(2008) H. Lange et al.   MOLECULAR AND CELLULAR BIOLOGY

A Novel RNA-Binding Protein Associated with Cell Plate Formation

(2008) L. Ma et al.   PLANT PHYSIOLOGY

A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana

(2008) O. Loudet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

All translation elongation factors and the e, f, and h subunits of translation initiation factor 3 are encoded by 5'-terminal oligopyrimidine (TOP) mRNAs

(2008) V. Iadevaia et al.   RNA