Discovery and Functional Annotation of Quantitative Trait Loci Affecting Resistance to Sea Lice in Atlantic Salmon

Accuracy of genotype imputation and genomic predictions in a two-generation farmed Atlantic salmon population using high-density and low-density SNP panels

(2018) Grazyella M. Yoshida et al.   AQUACULTURE

Using an atlas of gene regulation across 44 human tissues to inform complex disease- and trait-associated variation

(2018) Eric R. Gamazon et al.   NATURE GENETICS

STK17B promotes carcinogenesis and metastasis via AKT/GSK-3β/Snail signaling in hepatocellular carcinoma

(2018) Yaliang Lan et al.   Cell Death & Disease

Genome-Wide Association and Genomic Selection for Resistance to Amoebic Gill Disease in Atlantic Salmon

(2018) Diego Robledo et al.   G3-Genes Genomes Genetics

Gene Expression Response to Sea Lice in Atlantic Salmon Skin: RNA Sequencing Comparison Between Resistant and Susceptible Animals

(2018) Diego Robledo et al.   Frontiers in Genetics

The drivers of sea lice management policies and how best to integrate them into a risk management strategy: An ecosystem approach to sea lice management

(2017) D Jackson et al.   JOURNAL OF FISH DISEASES

Genetic effects on gene expression across human tissues

(2017) François Aguet et al.   NATURE

Future directions in breeding for disease resistance in aquaculture species

(2017) Ross D. Houston   REVISTA BRASILEIRA DE ZOOTECNIA-BRAZILIAN JOURNAL OF ANIMAL SCIENCE

Exploiting biological priors and sequence variants enhances QTL discovery and genomic prediction of complex traits

(2016) I. M. MacLeod et al.   BMC GENOMICS

Genomewide single nucleotide polymorphism discovery in Atlantic salmon (Salmo salar): validation in wild and farmed American and European populations

(2016) J. M. Yáñez et al.   Molecular Ecology Resources

The Atlantic salmon genome provides insights into rediploidization

(2016) Sigbjørn Lien et al.   NATURE

Sequence-based Association Analysis Reveals an MGST1 eQTL with Pleiotropic Effects on Bovine Milk Composition

(2016) Mathew D. Littlejohn et al.   Scientific Reports

AllelicImbalance: an R/ bioconductor package for detecting, managing, and visualizing allele expression imbalance data from RNA sequencing

(2015) Jesper R. Gådin et al.   BMC BIOINFORMATICS

Transcriptional response of Atlantic salmon families to Piscirickettsia salmonis infection highlights the relevance of the iron-deprivation defence system

(2015) Rodrigo Pulgar et al.   BMC GENOMICS

Genome-wide association analysis reveals loci associated with resistance against Piscirickettsia salmonis in two Atlantic salmon (Salmo salar L.) chromosomes

(2015) Katharina Correa et al.   BMC GENOMICS

Signatures of resistance to Lepeophtheirus salmonis include a TH2-type response at the louse-salmon interface

(2015) Laura M. Braden et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Functional genomics bridges the gap between quantitative genetics and molecular biology

(2015) Tuuli Lappalainen   GENOME RESEARCH

Regional heritability mapping method helps explain missing heritability of blood lipid traits in isolated populations

(2015) M Shirali et al.   HEREDITY

The control of sea lice in Atlantic salmon by selective breeding

(2015) Karim Gharbi et al.   Journal of the Royal Society Interface

The role of regulatory variation in complex traits and disease

(2015) Frank W. Albert et al.   NATURE REVIEWS GENETICS

Drug resistance in sea lice: a threat to salmonid aquaculture

(2015) Stian Mørch Aaen et al.   TRENDS IN PARASITOLOGY

A new tool called DISSECT for analysing large genomic data sets using a Big Data approach

(2015) Oriol Canela-Xandri et al.   Nature Communications

Combined QTL and Selective Sweep Mappings with Coding SNP Annotation and cis -eQTL Analysis Revealed PARK2 and JAG2 as New Candidate Genes for Adiposity Regulation

(2015) Pierre-François Roux et al.   G3-Genes Genomes Genetics

Genetic co-variation between resistance against both Caligus rogercresseyi and Piscirickettsia salmonis, and body weight in Atlantic salmon (Salmo salar)

(2014) José M. Yáñez et al.   AQUACULTURE

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Comparative transcriptomics of Atlantic Salmo salar, chum Oncorhynchus keta and pink salmon O. gorbuscha during infections with salmon lice Lepeophtheirus salmonis

(2014) Ben JG Sutherland et al.   BMC GENOMICS

A new approach for efficient genotype imputation using information from relatives

(2014) Mehdi Sargolzaei et al.   BMC GENOMICS

Disease Resistance in Atlantic Salmon (Salmo salar): Coinfection of the Intracellular Bacterial Pathogen Piscirickettsia salmonis and the Sea Louse Caligus rogercresseyi

(2014) Jean Paul Lhorente et al.   PLoS One

Genomic prediction in an admixed population of Atlantic salmon (Salmo salar)

(2014) Jørgen ØdegÃ¥rd et al.   Frontiers in Genetics

The power of regional heritability analysis for rare and common variant detection: simulations and application to eye biometrical traits

(2013) Yoshinobu Uemoto et al.   Frontiers in Genetics

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Components of the accuracy of genomic prediction in a multi-breed sheep population1

(2012) H. D. Daetwyler et al.   JOURNAL OF ANIMAL SCIENCE

Localising Loci underlying Complex Trait Variation Using Regional Genomic Relationship Mapping

(2012) Yoshitaka Nagamine et al.   PLoS One

DRAK2 Participates in a Negative Feedback Loop to Control TGF-β/Smads Signaling by Binding to Type I TGF-β Receptor

(2012) Kyung-Min Yang et al.   Cell Reports

Estimates of genetic variation in the susceptibility of Atlantic salmon (Salmo salar) to the salmon louse Lepeophtheirus salmonis

(2011) Bjarne Gjerde et al.   AQUACULTURE

Quantitative genetic basis for resistance to Caligus rogercresseyi sea lice in a breeding population of Atlantic salmon (Salmo salar)

(2011) Jean Paul Lhorente et al.   AQUACULTURE

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

Mouse genomic variation and its effect on phenotypes and gene regulation

(2011) Thomas M. Keane et al.   NATURE

Genetic variation of gross gill pathology and survival of Atlantic salmon (Salmo salar L.) during natural amoebic gill disease challenge

(2009) Richard S. Taylor et al.   AQUACULTURE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Establishing an adjusted p-value threshold to control the family-wide type 1 error in genome wide association studies

(2009) Priya Duggal et al.   BMC GENOMICS

Prospects for a genetic management strategy to control Gyrodactylus salaris infection in wild Atlantic salmon (Salmo salar) stocks

(2009) Ragnar Salte et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

The global economic cost of sea lice to the salmonid farming industry

(2009) Mark J Costello   JOURNAL OF FISH DISEASES

Altered Thymic Selection and Increased Autoimmunity Caused by Ectopic Expression of DRAK2 during T Cell Development

(2009) M. Gatzka et al.   JOURNAL OF IMMUNOLOGY

Sensitivity assessment of Caligus rogercresseyi to emamectin benzoate in Chile

(2008) Sandra Bravo et al.   AQUACULTURE