Genomic evidence for a hybrid origin of the yeast opportunistic pathogen Candida albicans

Hybridization Facilitates Adaptive Evolution in Two Major Fungal Pathogens

(2020) Himeshi Samarasinghe et al.   Genes

Ancestral admixture is the main determinant of global biodiversity in fission yeast

(2019) Sergio Tusso et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of hybrid fitness during speciation

(2019) Andrius J. Dagilis et al.   PLoS Genetics

Whole-Genome Sequencing of the Opportunistic Yeast Pathogen Candida inconspicua Uncovers Its Hybrid Origin

(2019) Verónica Mixão et al.   Frontiers in Genetics

Multispecies hybridization in birds

(2019) Jente Ottenburghs   Avian Research

Recombining Your Way Out of Trouble: The Genetic Architecture of Hybrid Fitness under Environmental Stress

(2019) Zebin Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomes shed light on the secret life of Candida glabrata: not so asexual, not so commensal

(2018) Toni Gabaldón et al.   CURRENT GENETICS

Gene flow contributes to diversification of the major fungal pathogen Candida albicans

(2018) Jeanne Ropars et al.   Nature Communications

Genome evolution across 1,011 Saccharomyces cerevisiae isolates

(2018) Jackson Peter et al.   NATURE

Global analysis of mutations driving microevolution of a heterozygous diploid fungal pathogen

(2018) Iuliana V. Ene et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genome of the Human Pathogen Candida albicans Is Shaped by Mutation and Cryptic Sexual Recombination

(2018) Joshua M. Wang et al.   mBio

A Unique Saccharomyces cerevisiae × Saccharomyces uvarum Hybrid Isolated From Norwegian Farmhouse Beer: Characterization and Reconstruction

(2018) Kristoffer Krogerus et al.   Frontiers in Microbiology

Diverse Lineages of Candida albicans Live on Old Oaks

(2018) Douda Bensasson et al.   GENETICS

Spore-autonomous fluorescent protein expression identifies meiotic chromosome mis-segregation as the principal cause of hybrid sterility in yeast

(2018) David W. Rogers et al.   PLOS BIOLOGY

Loss of Heterozygosity Drives Adaptation in Hybrid Yeast

(2017) Caiti S. Smukowski Heil et al.   MOLECULAR BIOLOGY AND EVOLUTION

Candida and its dual lifestyle as a commensal and a pathogen

(2017) Mathieu Cauchie et al.   RESEARCH IN MICROBIOLOGY

The hybrid genomes of Saccharomyces pastorianus : A current perspective

(2017) Chandre Monerawela et al.   YEAST

Hybridization and emergence of virulence in opportunistic human yeast pathogens

(2017) Verónica Mixão et al.   YEAST

HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies

(2016) Peter Edge et al.   GENOME RESEARCH

TheCandidaGenome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data

(2016) Marek S. Skrzypek et al.   NUCLEIC ACIDS RESEARCH

Multiple Origins of the Pathogenic Yeast Candida orthopsilosis by Separate Hybridizations between Two Parental Species

(2016) Markus S. Schröder et al.   PLoS Genetics

Negative epistasis: a route to intraspecific reproductive isolation in yeast?

(2015) Jing Hou et al.   CURRENT GENETICS

The parasexual lifestyle of Candida albicans

(2015) Richard J Bennett   CURRENT OPINION IN MICROBIOLOGY

Recognition of seven species in the Cryptococcus gattii/Cryptococcus neoformans species complex

(2015) Ferry Hagen et al.   FUNGAL GENETICS AND BIOLOGY

Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage

(2015) Marina Marcet-Houben et al.   PLOS BIOLOGY

Origin of the Yeast Whole-Genome Duplication

(2015) Kenneth H. Wolfe   PLOS BIOLOGY

The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis

(2015) Leszek P. Pryszcz et al.   PLoS Genetics

Hybridization in Parasites: Consequences for Adaptive Evolution, Pathogenesis, and Public Health in a Changing World

(2015) Kayla C. King et al.   PLoS Pathogens

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Genome Comparison of Candida orthopsilosis Clinical Strains Reveals the Existence of Hybrids between Two Distinct Subspecies

(2014) Leszek P. Pryszcz et al.   Genome Biology and Evolution

Genetic and phenotypic intra-species variation inCandida albicans

(2014) Matthew P. Hirakawa et al.   GENOME RESEARCH

The complex hybrid origins of the root knot nematodes revealed through comparative genomics

(2014) David H. Lunt et al.   PeerJ

Parasexuality and Ploidy Change in Candida tropicalis

(2013) Riyad N. H. Seervai et al.   EUKARYOTIC CELL

Unexpected Genomic Variability in Clinical and Environmental Strains of the Pathogenic Yeast Candida parapsilosis

(2013) Leszek P. Pryszcz et al.   Genome Biology and Evolution

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes

(2013) Pierre Gladieux et al.   MOLECULAR ECOLOGY

The ‘obligate diploid’ Candida albicans forms mating-competent haploids

(2013) Meleah A. Hickman et al.   NATURE

Fitness Trade-offs Restrict the Evolution of Resistance to Amphotericin B

(2013) Benjamin Matteson Vincent et al.   PLOS BIOLOGY

Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure

(2013) Dale Muzzey et al.   GENOME BIOLOGY

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Evolutionary Role of Interspecies Hybridization and Genetic Exchanges in Yeasts

(2012) Lucia Morales et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Sequence and Analysis of the Genome of the Pathogenic Yeast Candida orthopsilosis

(2012) Alessandro Riccombeni et al.   PLoS One

Hidden Killers: Human Fungal Infections

(2012) G. D. Brown et al.   Science Translational Medicine

Does stress induce (para)sex? Implications for Candida albicans evolution

(2012) Judith Berman et al.   TRENDS IN GENETICS

Genetic Diversity and Genomic Plasticity of Cryptococcus neoformans AD Hybrid Strains

(2012) Wenjun Li et al.   G3-Genes Genomes Genetics

Evolution of Mating within the Candida parapsilosis Species Group

(2011) Sixiang Sai et al.   EUKARYOTIC CELL

The Ascomycete Verticillium longisporum Is a Hybrid and a Plant Pathogen with an Expanded Host Range

(2011) Patrik Inderbitzin et al.   PLoS One

Phylogenetics and Taxonomy of the Fungal Vascular Wilt Pathogen Verticillium, with the Descriptions of Five New Species

(2011) Patrik Inderbitzin et al.   PLoS One

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Sexual reproduction in the Candida clade: cryptic cycles, diverse mechanisms, and alternative functions

(2010) Kevin Alby et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans

(2009) A. P. Jackson et al.   GENOME RESEARCH

The changing face of epidemiology of invasive fungal disease in Europe

(2009) Cornelia Lass-Flörl   MYCOSES

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

(2009) Geraldine Butler et al.   NATURE

A history of research on yeasts 12: medical yeasts part 1,Candida albicans

(2008) James A. Barnett   YEAST

The Parasexual Cycle in Candida albicans Provides an Alternative Pathway to Meiosis for the Formation of Recombinant Strains

(2008) Anja Forche et al.   PLOS BIOLOGY