Recombining Your Way Out of Trouble: The Genetic Architecture of Hybrid Fitness under Environmental Stress

Detecting the True Extent of Introgression during Anthropogenic Hybridization

(2019) S. Eryn McFarlane et al.   TRENDS IN ECOLOGY & EVOLUTION

Genetic Properties Responsible for the Transgressive Segregation of Days to Heading in Rice

(2019) Yohei Koide et al.   G3-Genes Genomes Genetics

Improved discovery of genetic interactions using CRISPRiSeq across multiple environments

(2019) Mia Jaffe et al.   GENOME RESEARCH

Layers of Cryptic Genetic Variation Underlie a Yeast Complex Trait

(2019) Jonathan T. Lee et al.   GENETICS

Aneuploidy Enables Cross-Adaptation to Unrelated Drugs

(2019) Feng Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Aneuploidy in yeast: Segregation error or adaptation mechanism?

(2019) Ciaran Gilchrist et al.   YEAST

A brief introduction to mixed effects modelling and multi-model inference in ecology

(2018) Xavier A. Harrison et al.   PeerJ

Spore-autonomous fluorescent protein expression identifies meiotic chromosome mis-segregation as the principal cause of hybrid sterility in yeast

(2018) David W. Rogers et al.   PLOS BIOLOGY

Heterosis in hybrids within and between yeast species

(2017) J. P. Bernardes et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Modeling the contributions of chromosome segregation errors and aneuploidy to Saccharomyces hybrid sterility

(2017) Primrose J. Boynton et al.   YEAST

The Stress-Inducible Peroxidase TSA2 Underlies a Conditionally Beneficial Chromosomal Duplication in Saccharomyces cerevisiae

(2017) Robert A. Linder et al.   G3-Genes Genomes Genetics

Mechanical Transgressive Segregation and the Rapid Origin of Trophic Novelty

(2017) Roi Holzman et al.   Scientific Reports

What, if anything, are hybrids: enduring truths and challenges associated with population structure and gene flow

(2016) Zachariah Gompert et al.   Evolutionary Applications

Genome scan for nonadditive heterotic trait loci reveals mainly underdominant effects in Saccharomyces cerevisiae

(2016) Efrat Laiba et al.   GENOME

Recovery from hybrid breakdown in a marine invertebrate is faster, stronger and more repeatable under environmental stress

(2016) A. S. Hwang et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

A genomic perspective on hybridization and speciation

(2016) Bret A. Payseur et al.   MOLECULAR ECOLOGY

Anderson's and Stebbins' Prophecy Comes True: Genetic Exchange in Fluctuating Environments

(2016) Michael L. Arnold   SYSTEMATIC BOTANY

Spore Germination Determines Yeast Inbreeding according to Fitness in the Local Environment

(2015) Eric L. Miller et al.   AMERICAN NATURALIST

A Systems Approach to Elucidate Heterosis of Protein Abundances in Yeast

(2015) Mélisande Blein-Nicolas et al.   MOLECULAR & CELLULAR PROTEOMICS

Evolutionary rescue by compensatory mutations is constrained by genomic and environmental backgrounds

(2015) M. Filteau et al.   Molecular Systems Biology

Hybridization in Parasites: Consequences for Adaptive Evolution, Pathogenesis, and Public Health in a Changing World

(2015) Kayla C. King et al.   PLoS Pathogens

Dosage compensation can buffer copy-number variation in wild yeast

(2015) James Hose et al.   eLife

Chromosomal Rearrangements as a Major Mechanism in the Onset of Reproductive Isolation in Saccharomyces cerevisiae

(2014) Jing Hou et al.   CURRENT BIOLOGY

HOW COMMON IS HOMOPLOID HYBRID SPECIATION?

(2014) Molly Schumer et al.   EVOLUTION

Hybridization facilitates evolutionary rescue

(2014) Rike B. Stelkens et al.   Evolutionary Applications

Allelic Variation, Aneuploidy, and Nongenetic Mechanisms Suppress a Monogenic Trait in Yeast

(2014) A. Sirr et al.   GENETICS

Extensive heterosis in growth of yeast hybrids is explained by a combination of genetic models

(2014) R Shapira et al.   HEREDITY

The effect of hybrid transgression on environmental tolerance in experimental yeast crosses

(2014) R. B. Stelkens et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Analyses of genetic ancestry enable key insights for molecular ecology

(2013) Zachariah Gompert et al.   MOLECULAR ECOLOGY

Aneuploidy underlies a multicellular phenotypic switch

(2013) Z. Tan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Elevated oxidative damage is correlated with reduced fitness in interpopulation hybrids of a marine copepod

(2013) F. S. Barreto et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Heterosis Is Prevalent Among Domesticated but not Wild Strains of Saccharomyces cerevisiae

(2013) Marcin Plech et al.   G3-Genes Genomes Genetics

Dynamic Large-Scale Chromosomal Rearrangements Fuel Rapid Adaptation in Yeast Populations

(2013) Shang-Lin Chang et al.   PLoS Genetics

Environmental Dependence of Genetic Constraint

(2013) Marjon G. J. de Vos et al.   PLoS Genetics

Estimating ancestry and heterozygosity of hybrids using molecular markers

(2012) Benjamin M Fitzpatrick   BMC EVOLUTIONARY BIOLOGY

Transgressive Hybrids as Hopeful Monsters

(2012) Dylan R. Dittrich-Reed et al.   Evolutionary Biology

Fitness and morphological outcomes of many generations of hybridization in the copepodTigriopus californicus

(2012) V. L. Pritchard et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Life History Shapes Trait Heredity by Accumulation of Loss-of-Function Alleles in Yeast

(2012) E. Zorgo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Recombinant hybrids retain heterozygosity at many loci: new insights into the genomics of reproductive isolation inPopulus

(2012) Dorothea Lindtke et al.   MOLECULAR ECOLOGY

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Aneuploidy and Drug Resistance in Pathogenic Fungi

(2012) Kyung J. Kwon-Chung et al.   PLoS Pathogens

Extraordinary transgressive phenotypes of hybrid tomato are influenced by epigenetics and small silencing RNAs

(2011) Padubidri V Shivaprasad et al.   EMBO JOURNAL

Hybrid fitness, adaptation and evolutionary diversification: lessons learned from Louisiana Irises

(2011) M L Arnold et al.   HEREDITY

Adaptation of Saccharomyces cerevisiae to saline stress through laboratory evolution

(2011) R. DHAR et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Temperature stress increases hybrid incompatibilities in the parasitic wasp genus Nasonia

(2011) T. KOEVOETS et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Hybrid Breakdown Weakens under Thermal Stress in Population Crosses of the Copepod Tigriopus californicus

(2011) Christopher S. Willett   JOURNAL OF HEREDITY

Assessing the complex architecture of polygenic traits in diverged yeast populations

(2011) FRANCISCO A. CUBILLOS et al.   MOLECULAR ECOLOGY

Reciprocal Sign Epistasis between Frequently Experimentally Evolved Adaptive Mutations Causes a Rugged Fitness Landscape

(2011) Daniel J. Kvitek et al.   PLoS Genetics

Aneuploidy confers quantitative proteome changes and phenotypic variation in budding yeast

(2010) Norman Pavelka et al.   NATURE

Understanding the onset of hybrid speciation

(2010) Arne W. Nolte et al.   TRENDS IN GENETICS

A Genome-Wide Analysis Reveals No Nuclear Dobzhansky-Muller Pairs of Determinants of Speciation between S. cerevisiae and S. paradoxus, but Suggests More Complex Incompatibilities

(2010) Katy C. Kao et al.   PLoS Genetics

Dynamics of the yeast transcriptome during wine fermentation reveals a novel fermentation stress response

(2009) Virginia D. Marks et al.   FEMS YEAST RESEARCH

Functional analyses of PAU genes in Saccharomyces cerevisiae

(2009) Z. Luo et al.   MICROBIOLOGY-SGM

Population genomics of domestic and wild yeasts

(2009) Gianni Liti et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Acquisition of Aneuploidy Provides Increased Fitness during the Evolution of Antifungal Drug Resistance

(2009) Anna M. Selmecki et al.   PLoS Genetics

GENETIC DISTANCE BETWEEN SPECIES PREDICTS NOVEL TRAIT EXPRESSION IN THEIR HYBRIDS

(2008) Rike Stelkens et al.   EVOLUTION

Fitness distribution and transgressive segregation across 40 environments in a hybrid progeny population of the human-pathogenic yeast Cryptococcus neoformans

(2008) Morvarid Shahid et al.   GENOME

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

THE RATE OF GENOME STABILIZATION IN HOMOPLOID HYBRID SPECIES

(2007) C. Alex Buerkle et al.   EVOLUTION